←Back to structures
S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00535
Bact-VirS2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00535
Identity
- Kingdom:
- phage
Quality
78.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 59-204
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14014.12 best | DUF4230 | 42.4 | 1.00e-10 | 98.6% | 83.3% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.62 | 49.0 | 4.49e-01 | 90.4% | 63.7% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.60 | 35.0 | 3.49e-01 | 83.6% | 53.5% |
| 2drhB00 | 3.60.70.12 | Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase | 0.57 | 45.0 | 3.32e-01 | 82.2% | 55.5% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.55 | 31.0 | 2.97e-01 | 81.5% | 45.4% |
| 3n72A00 | 3.15.10.20 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain | 0.54 | 43.0 | 4.40e-01 | 84.2% | 90.2% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 37.0 | 3.04e-01 | 83.6% | 39.7% |
| 2rckA01 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.53 | 43.0 | 3.78e-01 | 87.0% | 63.3% |
| 3cfuA00 | 2.60.40.1240 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 29.0 | 2.99e-01 | 97.9% | 53.5% |
| 3of6E00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 25.0 | 2.92e-01 | 82.2% | 58.7% |
| 1yqzA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.50 | 32.0 | 3.70e-01 | 75.3% | 87.0% |
| 4fx9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.50 | 33.0 | 3.69e-01 | 74.7% | 85.0% |
| 7uvpA03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.50 | 38.0 | 3.89e-01 | 79.5% | 98.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4642761 | 331.22.1.2 ↗ | a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 | 0.60 | 36.0 | 3.15e-01 | 74.7% | 41.0% |
| 3923837 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.58 | 51.0 | 3.60e-01 | 97.3% | 79.5% |
| 3482998 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.57 | 45.0 | 4.46e-01 | 80.8% | 98.0% |
| None | — | 0.55 | 42.0 | 3.93e-01 | 80.1% | 84.3% | |
| 3956879 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.55 | 39.0 | 3.61e-01 | 73.3% | 91.3% |
| 4025435 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.55 | 34.0 | 3.11e-01 | 80.8% | 46.3% |
| 1512997 | 825.1.1.0 ↗ | beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins | 0.54 | 39.0 | 3.77e-01 | 87.0% | 63.9% |
| 3999356 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.54 | 43.0 | 4.68e-01 | 98.6% | 96.8% |
| 4093339 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.54 | 41.0 | 2.97e-01 | 80.8% | 93.3% |
| 395916 | 883.1.1.6 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N | 0.53 | 46.0 | 4.63e-01 | 93.8% | 97.3% |
| 4963188 | 212.1.1.9 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair | 0.53 | 40.0 | 4.21e-01 | 78.1% | 100.0% |
| 4984424 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.51 | 45.0 | 3.28e-01 | 94.5% | 81.8% |
| 4953123 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.51 | 37.0 | 2.67e-01 | 74.0% | 35.3% |
| 3520465 | 212.1.1.17 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFG_IV | 0.51 | 40.0 | 4.36e-01 | 98.6% | 96.8% |
| 4029236 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.51 | 39.0 | 3.71e-01 | 78.1% | 97.0% |
| 3838829 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.51 | 39.0 | 3.64e-01 | 81.5% | 79.5% |