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S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00589
Bact-VirS2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00589
Identity
- Kingdom:
- phage
Quality
39.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 231-317
Domain cluster:
rep: RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00411__D3-76
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.69 | 33.0 | 3.32e-01 | 72.4% | 43.8% |
| 4bhbA01 | 3.30.160.70 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain | 0.67 | 36.0 | 3.97e-01 | 88.5% | 64.3% |
| 2cdqA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 49.0 | 4.98e-01 | 85.1% | 94.0% |
| 1e3mB02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.60 | 40.0 | 3.51e-01 | 97.7% | 45.0% |
| 1wsrA01 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.59 | 48.0 | 4.05e-01 | 89.7% | 64.4% |
| 1z5hA03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 44.0 | 4.64e-01 | 87.4% | 100.0% |
| 2o1uB01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.57 | 49.0 | 4.07e-01 | 100.0% | 90.9% |
| 7ue1B01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 38.0 | 3.29e-01 | 95.4% | 43.8% |
| 4gniA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 40.0 | 4.04e-01 | 97.7% | 80.5% |
| 3kksB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 38.0 | 3.24e-01 | 96.6% | 42.8% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.54 | 41.0 | 3.80e-01 | 97.7% | 63.2% |
| 1iv0A00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.54 | 43.0 | 4.14e-01 | 96.6% | 77.6% |
| 5z3gZ01 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.54 | 40.0 | 3.60e-01 | 97.7% | 56.5% |
| 6ea2A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.52 | 45.0 | 3.63e-01 | 100.0% | 97.3% |
| 4qhpA04 | 2.60.40.1840 | Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain | 0.52 | 43.0 | 4.12e-01 | 89.7% | 99.0% |
| 4a2bA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 40.0 | 3.95e-01 | 97.7% | 76.8% |
| 1mgtA01 | 3.30.160.70 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain | 0.51 | 33.0 | 3.36e-01 | 85.1% | 65.9% |
| 1nmnA00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.51 | 42.0 | 3.85e-01 | 98.9% | 67.5% |
| 1egjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 44.0 | 4.25e-01 | 97.7% | 96.0% |
| 1woqA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 44.0 | 4.08e-01 | 98.9% | 92.0% |
| 6ctzA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 34.0 | 3.37e-01 | 70.1% | 72.0% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 39.0 | 4.15e-01 | 92.0% | 100.0% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4408522 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.70 | 34.0 | 4.17e-01 | 74.7% | 72.7% |
| 4145578 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.65 | 41.0 | 3.53e-01 | 98.9% | 40.0% |
| 4047059 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.64 | 43.0 | 3.67e-01 | 98.9% | 41.4% |
| 4616922 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.64 | 43.0 | 3.63e-01 | 98.9% | 40.7% |
| 4290937 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 42.0 | 3.62e-01 | 100.0% | 42.1% |
| 4235437 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.63 | 55.0 | 5.38e-01 | 96.6% | 88.4% |
| 5042104 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.63 | 49.0 | 5.12e-01 | 85.1% | 98.8% |
| 4289497 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 44.0 | 3.56e-01 | 100.0% | 37.6% |
| 4171259 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 43.0 | 3.59e-01 | 98.9% | 39.4% |
| 4269222 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.63 | 49.0 | 5.02e-01 | 85.1% | 91.8% |
| 4136239 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.62 | 41.0 | 3.52e-01 | 100.0% | 40.7% |
| 5065987 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.62 | 48.0 | 4.89e-01 | 83.9% | 94.1% |
| 4190224 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.62 | 42.0 | 2.69e-01 | 100.0% | 13.6% |
| 5023531 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.62 | 49.0 | 5.08e-01 | 85.1% | 97.5% |
| 4627306 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.62 | 41.0 | 3.31e-01 | 100.0% | 33.7% |
| 4263690 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.62 | 43.0 | 3.71e-01 | 100.0% | 44.1% |
| 4185079 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.61 | 41.0 | 3.46e-01 | 100.0% | 39.4% |
| 4141569 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.61 | 48.0 | 4.99e-01 | 85.1% | 96.2% |
| 3786358 | 2484.2.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain | 0.61 | 39.0 | 3.87e-01 | 90.8% | 60.0% |
| 4958759 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.61 | 47.0 | 4.90e-01 | 85.1% | 97.5% |
| 5052109 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.60 | 47.0 | 4.79e-01 | 85.1% | 92.9% |
| 4315567 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 42.0 | 3.49e-01 | 100.0% | 40.0% |
| 5028902 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.60 | 47.0 | 5.02e-01 | 86.2% | 98.7% |
| 4996738 | 2484.1.1.291 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_V | 0.60 | 41.0 | 2.45e-01 | 98.9% | 8.9% |
| 5033817 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.60 | 47.0 | 4.94e-01 | 86.2% | 96.2% |
| 4300532 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 41.0 | 3.55e-01 | 97.7% | 45.2% |
| 4940092 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.60 | 47.0 | 4.84e-01 | 85.1% | 97.5% |
| 4989009 | 2484.1.1.331 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_III | 0.60 | 41.0 | 2.68e-01 | 100.0% | 14.7% |
| 4516333 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 40.0 | 3.47e-01 | 100.0% | 42.1% |
| 4378342 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.59 | 42.0 | 2.66e-01 | 100.0% | 13.9% |
| 4985405 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.59 | 47.0 | 4.13e-01 | 85.1% | 77.6% |
| 3404784 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 48.0 | 4.69e-01 | 90.8% | 98.9% |
| 4368826 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.58 | 41.0 | 3.42e-01 | 100.0% | 40.0% |
| 3268586 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.58 | 50.0 | 4.84e-01 | 95.4% | 95.0% |
| 5082529 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.58 | 45.0 | 3.92e-01 | 85.1% | 71.1% |
| 4108225 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.57 | 41.0 | 3.55e-01 | 97.7% | 47.1% |
| 4936004 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.57 | 42.0 | 3.44e-01 | 98.9% | 41.2% |
| 1560747 | 3975.1.1.1 ↗ | a+b two layers › uncharacterized protein lpg1496 N-terminal domain › uncharacterized protein lpg1496 N-terminal domain › uncharacterized protein lpg1496 N-terminal domain › lpg1496_N | 0.57 | 48.0 | 4.21e-01 | 94.3% | 88.1% |
| 3964879 | 2484.1.1.60 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_E_G | 0.57 | 42.0 | 3.95e-01 | 100.0% | 64.8% |
| 4018089 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.57 | 44.0 | 4.00e-01 | 85.1% | 73.3% |
| 3927328 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.57 | 48.0 | 4.55e-01 | 95.4% | 95.2% |
| 4995246 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.56 | 44.0 | 3.97e-01 | 85.1% | 78.0% |
| 5053626 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.56 | 40.0 | 3.29e-01 | 100.0% | 39.4% |
| 4940399 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.56 | 43.0 | 3.96e-01 | 85.1% | 86.4% |
| 3621125 | 3209.1.1.1 ↗ | a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e | 0.55 | 41.0 | 3.63e-01 | 97.7% | 51.9% |
| 5048829 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.55 | 43.0 | 3.87e-01 | 83.9% | 80.8% |
| 4502261 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.55 | 42.0 | 3.73e-01 | 93.1% | 56.8% |
| 3270202 | 3209.1.1.1 ↗ | a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e | 0.55 | 41.0 | 3.10e-01 | 97.7% | 31.1% |
| 3452542 | 3407.1.1.0 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.55 | 46.0 | 4.39e-01 | 100.0% | 78.1% |
| 3777114 | 2484.1.1.205 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 | 0.55 | 40.0 | 3.18e-01 | 97.7% | 35.8% |
| 4467354 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.55 | 40.0 | 3.31e-01 | 100.0% | 41.9% |
| 3246016 | 2484.1.1.205 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 | 0.54 | 40.0 | 3.25e-01 | 97.7% | 40.0% |
| 4153442 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.54 | 42.0 | 3.86e-01 | 85.1% | 72.5% |
| 3588646 | 306.8.1.3 ↗ | a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › SNF2_assoc | 0.53 | 45.0 | 4.34e-01 | 98.9% | 95.2% |
| 5014579 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.53 | 42.0 | 4.41e-01 | 88.5% | 100.0% |
| 3238342 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 47.0 | 3.51e-01 | 100.0% | 65.0% |
| 2771374 | 2484.5.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase | 0.51 | 46.0 | 4.14e-01 | 100.0% | 72.7% |
| 3511886 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 39.0 | 3.34e-01 | 83.9% | 64.1% |
| 5007420 | 2484.1.1.333 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1464 | 0.51 | 41.0 | 3.36e-01 | 97.7% | 47.3% |
D2
high
residues 611-694
D3
medium
residues 5-157