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SAM_domain_containing_protein

Euk-Vir

Pandoravirus_macleodensis

SAM_domain_containing_protein__YP_009481238__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481238 ↗
Protein ID:
SAM_domain_containing_protein
Kingdom:
euk

Quality

46.1 mean pLDDT

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-166
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_18__YP_009481628__Pandoravirus_neocaledonia__2107708__D89-187
D2 medium residues 429-508
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF07647.25 best SAM_2 36.8 4.90e-09 87.5% 93.9%
PF00536.38 SAM_1 36.0 1.00e-08 86.2% 95.3%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pk1B00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.91 76.0 8.15e-01 92.5% 100.0%
1kw4A00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.91 76.0 8.13e-01 95.0% 100.0%
3bs7A00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.90 80.0 8.33e-01 96.2% 100.0%
2dl0A01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.86 61.0 7.04e-01 93.8% 100.0%
3tacB01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.85 79.0 6.64e-01 100.0% 62.2%
2e8oA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.85 63.0 7.11e-01 82.5% 100.0%
1v85A00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.83 75.0 7.18e-01 100.0% 85.7%
1z1vA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.83 68.0 7.26e-01 90.0% 100.0%
3tadC03 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.77 69.0 6.35e-01 97.5% 81.2%
3tacB03 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.76 69.0 6.84e-01 100.0% 96.5%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 50.0 4.23e-01 90.0% 66.2%
1f68A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 52.0 4.79e-01 95.0% 98.1%
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 52.0 4.68e-01 97.5% 97.4%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.60 36.0 3.30e-01 97.5% 44.0%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.59 38.0 3.40e-01 98.8% 47.3%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 49.0 4.07e-01 95.0% 72.5%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 48.0 4.31e-01 96.2% 75.0%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.57 43.0 4.51e-01 95.0% 95.7%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.56 40.0 4.30e-01 73.8% 100.0%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 40.0 4.01e-01 100.0% 71.8%
2yqdA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 47.0 4.19e-01 97.5% 88.3%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.56 45.0 3.43e-01 92.5% 61.8%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.55 44.0 4.02e-01 90.0% 70.0%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 40.0 3.29e-01 80.0% 60.4%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 45.0 4.42e-01 97.5% 98.9%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.53 38.0 4.12e-01 100.0% 89.6%
3i01A01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 44.0 3.49e-01 100.0% 55.9%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.51 39.0 3.96e-01 87.5% 84.0%
3vr4B04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.50 39.0 3.22e-01 85.0% 57.6%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 43.0 4.07e-01 100.0% 85.1%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.50 34.0 3.53e-01 100.0% 74.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3525226 102.1.1.16 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.93 86.0 8.17e-01 100.0% 85.6%
3865238 102.1.1.16 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.93 84.0 8.05e-01 97.5% 84.4%
3236252 102.1.1.16 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.93 82.0 8.26e-01 95.0% 92.5%
3568800 102.1.1.16 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.92 84.0 6.93e-01 97.5% 58.5%
4436575 102.1.1.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.92 82.0 6.98e-01 98.8% 62.5%
3784278 102.1.1.16 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.90 83.0 8.32e-01 100.0% 96.2%
3540074 102.1.1.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.89 79.0 7.83e-01 100.0% 89.3%
3764558 102.1.1.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.89 80.0 8.02e-01 100.0% 95.0%
3722332 102.1.1.16 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.88 79.0 7.78e-01 97.5% 89.4%
3801628 102.1.1.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.87 81.0 7.97e-01 100.0% 94.0%
3225401 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.82 75.0 7.38e-01 100.0% 92.9%
3232037 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.80 73.0 6.54e-01 100.0% 74.5%
3892258 102.1.1.85 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_KIDINS220 0.77 70.0 6.79e-01 100.0% 91.1%
3625933 102.1.1.16 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.77 68.0 5.45e-01 96.2% 66.0%
3493029 102.1.1.16 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.76 70.0 6.57e-01 100.0% 87.4%
3584557 102.1.1.16 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.76 67.0 6.24e-01 96.2% 85.0%
3495655 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.76 69.0 6.67e-01 100.0% 92.2%
3501653 102.1.1.16 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.75 68.0 6.24e-01 100.0% 87.6%
3509286 102.1.1.85 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_KIDINS220 0.75 68.0 6.58e-01 100.0% 91.1%
4052361 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.72 60.0 5.96e-01 91.3% 85.9%
3647305 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.58 36.0 3.02e-01 100.0% 36.3%
3539335 3874.1.1.4 ↗ extended segments › Agnoprotein › Agnoprotein › Agnoprotein › UPF0220 0.58 43.0 3.62e-01 80.0% 80.7%
4886156 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 36.0 2.59e-01 100.0% 23.9%
4956974 2003.1.2.300 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.53 42.0 2.84e-01 90.0% 80.0%
3243805 5082.1.1.1 ↗ alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.50 41.0 2.93e-01 88.7% 70.4%