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SAM_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

SAM_domain_containing_protein__YP_009483865__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483865 ↗
Protein ID:
SAM_domain_containing_protein
Kingdom:
euk

Quality

49.4 mean pLDDT

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 488-566
PDB
Domain cluster: rep: SAM_domain_containing_protein__YP_009481238__Pandoravirus_macleodensis__2107707__D429-508
D2 medium residues 222-329
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_18__YP_009481628__Pandoravirus_neocaledonia__2107708__D89-187
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l4eA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 31.0 4.07e-01 76.9% 91.2%
4pwuC00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 41.0 4.64e-01 87.0% 96.2%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.58 38.0 4.36e-01 90.7% 92.4%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 32.0 3.36e-01 100.0% 58.2%
2zy2A02 1.10.20.110 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.56 38.0 3.41e-01 81.5% 49.7%
6kjcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 47.0 3.27e-01 95.4% 91.0%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 35.0 3.23e-01 85.2% 50.4%
3qxyA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.54 44.0 3.85e-01 89.8% 90.4%
4wp3C00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 47.0 4.02e-01 100.0% 85.0%
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.53 47.0 4.28e-01 100.0% 73.8%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.52 40.0 4.10e-01 93.5% 86.4%
6rv2A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 34.0 2.63e-01 93.5% 28.3%
2ab5A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 42.0 3.94e-01 100.0% 72.4%
6g0nA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 39.0 2.73e-01 81.5% 60.8%
2vmaA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.51 36.0 3.46e-01 90.7% 63.9%
4ag6A02 1.10.8.730 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 43.0 4.31e-01 94.4% 94.5%
1k3kA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.51 32.0 2.95e-01 100.0% 46.6%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.51 38.0 2.57e-01 80.6% 85.9%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 43.0 3.51e-01 95.4% 71.9%
2fzfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 43.0 3.90e-01 95.4% 82.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3197602 101.1.9.6 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N 0.73 51.0 4.81e-01 93.5% 60.0%
4958393 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.61 43.0 2.92e-01 91.7% 20.3%
3592874 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 39.0 3.96e-01 70.4% 83.6%
5007085 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.57 39.0 2.69e-01 89.8% 18.7%
3285380 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.56 40.0 3.84e-01 95.4% 64.8%
3647107 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.56 39.0 3.95e-01 92.6% 71.8%
3458503 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.56 41.0 4.15e-01 97.2% 78.2%
4970797 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 41.0 2.84e-01 90.7% 22.4%
5022206 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.55 41.0 2.99e-01 100.0% 27.3%
143338 630.1.1.0 ↗ a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain 0.54 45.0 3.97e-01 91.7% 97.5%
2055520 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.54 45.0 3.57e-01 94.4% 75.4%
5075473 241.6.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › ARPC4 0.53 38.0 3.38e-01 78.7% 50.6%
3392939 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 36.0 3.33e-01 72.2% 87.6%