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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00019
Bact-VirSCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00019
Identity
- Kingdom:
- phage
Quality
70.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-58
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.72 | 56.0 | 5.74e-01 | 100.0% | 92.0% |
| 2h56A02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.65 | 51.0 | 4.03e-01 | 87.0% | 47.4% |
| 3kt4A02 | 3.60.130.20 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain | 0.64 | 44.0 | 2.74e-01 | 72.2% | 23.1% |
| 2d2eA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 53.0 | 3.56e-01 | 100.0% | 30.1% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 55.0 | 4.69e-01 | 100.0% | 65.9% |
| 2e2oA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 42.0 | 2.93e-01 | 72.2% | 81.5% |
| 1kl9A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.60 | 47.0 | 4.03e-01 | 88.9% | 81.5% |
| 2r7rA08 | 1.20.120.1400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 41.0 | 3.54e-01 | 79.6% | 81.4% |
| 3euhC02 | 1.10.10.2260 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain | 0.55 | 44.0 | 3.72e-01 | 100.0% | 85.2% |
| 3ezjA03 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.55 | 38.0 | 3.83e-01 | 74.1% | 72.7% |
| 3tpaA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.52 | 40.0 | 2.77e-01 | 87.0% | 49.1% |
| 4iiwA01 | 3.30.1490.480 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Endolytic murein transglycosylase | 0.51 | 42.0 | 3.78e-01 | 92.6% | 78.9% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2895417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.73 | 62.0 | 5.53e-01 | 100.0% | 66.2% |
| 3656643 | 101.15.1.9 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 | 0.73 | 62.0 | 4.58e-01 | 100.0% | 37.8% |
| 3819870 | 101.15.1.6 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 | 0.72 | 62.0 | 4.57e-01 | 100.0% | 37.8% |
| 4995817 | 101.15.1.4 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 | 0.72 | 62.0 | 5.74e-01 | 100.0% | 75.7% |
| 3802087 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.72 | 60.0 | 4.11e-01 | 94.4% | 39.0% |
| 2124918 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.71 | 62.0 | 4.62e-01 | 100.0% | 39.0% |
| 3305689 | 101.15.1.9 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 | 0.70 | 56.0 | 4.20e-01 | 100.0% | 35.0% |
| 4555788 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.64 | 51.0 | 5.16e-01 | 88.9% | 98.2% |
| 3716764 | 101.15.1.12 ↗ | alpha arrays › HTH › LysM domain › LysM domain › PF30403 | 0.63 | 53.0 | 5.14e-01 | 98.1% | 86.7% |
| 5036086 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 45.0 | 4.12e-01 | 83.3% | 61.3% |
| 4876716 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.61 | 48.0 | 4.41e-01 | 90.7% | 64.9% |
| 4996616 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 46.0 | 4.54e-01 | 88.9% | 98.3% |
| None | — | 0.59 | 46.0 | 3.10e-01 | 87.0% | 26.8% | |
| 5013585 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.59 | 44.0 | 3.08e-01 | 87.0% | 88.8% |
| 3639587 | 2002.1.1.22 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ICL | 0.58 | 47.0 | 2.70e-01 | 90.7% | 16.3% |
| 3968266 | 3536.1.1.0 ↗ | a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains | 0.55 | 44.0 | 3.67e-01 | 92.6% | 71.4% |
| 3285988 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.54 | 38.0 | 2.58e-01 | 75.9% | 74.9% |
| 4032993 | 1075.3.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1+BPD_transp_1_N | 0.53 | 41.0 | 2.60e-01 | 87.0% | 82.0% |
| 3604555 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.51 | 38.0 | 2.58e-01 | 85.2% | 19.6% |
| 5023530 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.51 | 40.0 | 3.92e-01 | 90.7% | 85.0% |
| 3950673 | 3536.1.1.1 ↗ | a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › YceG | 0.50 | 40.0 | 3.86e-01 | 100.0% | 85.7% |