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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1XX__00041

Bact-Vir

SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00041

Identity

Kingdom:: phage

Quality

78.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 816-893

PDB

Domain cluster: rep: FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00046__D60-126

D2 medium residues 22-58

PDB

Domain cluster: rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00059__D24-58

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hshE00	3.40.1620.70	Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold ›	0.76	62.0	5.62e-01	100.0%	72.7%
3n3fA01	3.40.1620.70	Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold ›	0.73	60.0	5.83e-01	100.0%	93.0%
1yu0A01	2.10.10.30	Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) ›	0.71	58.0	5.41e-01	100.0%	76.5%
3a1pB00	3.30.860.10	Alpha Beta › 2-Layer Sandwich › 30s Ribosomal Protein S19; Chain A › Ribosomal protein S19/S15	0.69	54.0	4.40e-01	100.0%	52.9%
2jroA01	3.30.1910.10	Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain	0.66	52.0	4.55e-01	100.0%	61.5%
1xo1A02	3.40.50.1010	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease	0.66	49.0	3.29e-01	100.0%	20.1%
1uoyA01	2.30.130.50	Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 ›	0.66	52.0	4.69e-01	97.3%	63.2%
4bndA01	3.40.50.1000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like	0.64	51.0	3.51e-01	100.0%	30.1%
6l1kA01	3.40.50.1970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.60	46.0	3.02e-01	89.2%	52.8%
3lzdA02	3.40.50.11850	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 2	0.58	42.0	3.20e-01	83.8%	31.2%
1w4sA00	2.30.30.490	Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain	0.56	38.0	2.60e-01	70.3%	26.7%
4rkrD02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.56	44.0	3.09e-01	100.0%	42.4%
3h09A04	4.10.1240.40	Few Secondary Structures › Irregular › Hormone receptor fold ›	0.54	41.0	3.48e-01	89.2%	83.3%
4gc1A01	2.90.10.10	Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain	0.50	41.0	3.08e-01	100.0%	42.3%

ECOD (23)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3921177	3761.1.1.0 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related	0.89	74.0	6.50e-01	100.0%	63.6%
3405960	3761.1.1.2 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer	0.80	70.0	6.68e-01	100.0%	93.0%
3917719	3761.1.1.2 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer	0.79	66.0	6.30e-01	97.3%	86.7%
3900165	3761.1.1.2 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer	0.79	67.0	6.41e-01	97.3%	90.7%
3528795	3761.1.1.0 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related	0.76	66.0	6.24e-01	100.0%	82.2%
3987740	3761.1.1.0 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related	0.75	61.0	6.06e-01	100.0%	90.0%
4419934	4126.1.1.6 ↗	a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA	0.70	59.0	3.66e-01	100.0%	21.5%
5002640	3761.1.1.1 ↗	beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N	0.70	56.0	5.27e-01	100.0%	86.0%
4379675	838.1.1.1 ↗	a+b two layers › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal_S19	0.70	55.0	4.26e-01	100.0%	45.0%
4028209	838.1.1.1 ↗	a+b two layers › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal protein S19 › Ribosomal_S19	0.68	55.0	4.57e-01	100.0%	60.0%
4611006	3585.1.1.0 ↗	a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain	0.66	53.0	4.41e-01	91.9%	60.9%
4522026	3585.1.1.0 ↗	a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain	0.65	50.0	4.33e-01	89.2%	63.1%
3838580	2006.1.4.4 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N	0.64	48.0	3.16e-01	91.9%	17.8%
3290031	4126.1.1.1 ↗	a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA	0.62	49.0	3.18e-01	100.0%	46.5%
3278964	2006.1.1.11 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3	0.62	48.0	3.37e-01	100.0%	26.7%
56808	620.1.1.0 ↗	alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases	0.62	50.0	3.34e-01	100.0%	40.2%
3788960	2004.5.1.13 ↗	a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › SPA, Avl9	0.61	51.0	3.10e-01	100.0%	46.3%
4456383	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.60	47.0	2.83e-01	91.9%	51.2%
3308820	604.38.1.1 ↗	alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle › CCDC84	0.56	42.0	3.34e-01	91.9%	50.0%
3057047	64.3.1.0 ↗	beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain	0.56	47.0	3.97e-01	100.0%	84.3%
3262703	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.54	37.0	3.44e-01	100.0%	54.0%
4457853	3585.1.1.0 ↗	a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain	0.52	39.0	3.29e-01	89.2%	57.3%
2442382	3856.1.1.1 ↗	beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › Tail_spike_N	0.51	42.0	2.74e-01	100.0%	29.7%

D3 medium residues 292-352

PDB

Domain cluster: representative

D4 medium residues 403-464

PDB

D5 medium residues 578-627

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3s6xA01	6.20.10.20	Special › Other non-globular › Laminin ›	0.77	52.0	4.74e-01	100.0%	52.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2321116	53.1.1.0 ↗	beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral	0.75	51.0	4.45e-01	100.0%	46.8%