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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00081

Bact-Vir

SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00081

Identity

Kingdom:
phage

Quality

79.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-108
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 51.0 5.41e-01 98.8% 89.2%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.67 40.0 3.49e-01 81.0% 39.8%
2e9xD02 3.40.5.60 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.67 42.0 4.85e-01 98.8% 90.0%
2lsmA00 3.40.5.70 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › DNA packaging chaperone protein FI, C-terminal beta-strand domain 0.63 39.0 4.47e-01 100.0% 85.2%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.63 49.0 4.29e-01 100.0% 54.5%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 42.0 4.69e-01 100.0% 95.2%
4mloA01 2.60.120.810 Mainly Beta › Sandwich › Jelly Rolls › 0.61 44.0 3.53e-01 76.2% 83.6%
5yprA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 4.62e-01 98.8% 83.1%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 48.0 4.07e-01 100.0% 53.1%
1z6bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 44.0 3.82e-01 85.7% 77.5%
2q3xA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 43.0 3.58e-01 81.0% 62.0%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 3.91e-01 100.0% 81.0%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.55 43.0 3.96e-01 88.1% 67.3%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.54 43.0 3.70e-01 88.1% 52.5%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 4.11e-01 100.0% 96.9%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.78e-01 89.3% 84.3%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.65e-01 89.3% 78.0%
3e4vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.02e-01 76.2% 89.1%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 44.0 3.89e-01 100.0% 76.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3270284 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.84 48.0 5.69e-01 100.0% 81.7%
538 4.1.1.120 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_16 0.69 51.0 5.41e-01 98.8% 89.2%
3491618 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 43.0 5.13e-01 78.6% 98.2%
3895159 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 5.29e-01 97.6% 100.0%
4133267 4076.3.1.3 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.66 41.0 4.92e-01 100.0% 96.4%
3259043 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 44.0 4.74e-01 100.0% 84.3%
3203654 601.16.1.12 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_1 0.64 45.0 3.43e-01 97.6% 31.0%
218750 4076.3.1.1 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Packaging_FI 0.63 39.0 4.47e-01 100.0% 85.2%
4019491 601.16.1.7 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_9 0.63 46.0 3.44e-01 98.8% 30.7%
3180487 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 45.0 3.45e-01 98.8% 32.3%
4091791 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.84e-01 98.8% 89.3%
4024769 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.58 36.0 3.97e-01 83.3% 80.0%
1688584 10.1.1.6 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › VP4_haemagglut 0.55 48.0 3.91e-01 100.0% 80.5%
4609141 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.54 41.0 3.44e-01 79.8% 65.0%
3589333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 38.0 3.72e-01 100.0% 69.5%
4965857 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.52 37.0 3.95e-01 78.6% 92.8%
3888568 2.1.1.39 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 0.52 36.0 3.14e-01 73.8% 95.7%
4945700 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 31.0 2.54e-01 89.3% 33.3%
1233328 4.1.1.116 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_14 0.52 44.0 3.93e-01 100.0% 96.9%
4004115 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.51 39.0 3.25e-01 85.7% 62.4%
3698253 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.51 37.0 2.30e-01 77.4% 16.6%
5035282 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.50 42.0 3.73e-01 100.0% 64.0%