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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00166

Bact-Vir

SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00166

Identity

Kingdom:
phage

Quality

70.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-63
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.74 48.0 4.27e-01 71.0% 47.7%
1sz2A02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.65 48.0 3.36e-01 79.0% 42.0%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.65 44.0 4.12e-01 71.0% 62.7%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 51.0 3.84e-01 100.0% 50.7%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.57 41.0 3.49e-01 75.8% 72.1%
4mtlA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 46.0 3.29e-01 98.4% 77.4%
1g5bB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 44.0 3.09e-01 100.0% 62.9%
3c4nA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.50 36.0 2.96e-01 77.4% 84.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4856387 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.79 54.0 3.66e-01 72.6% 30.9%
3566423 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.77 55.0 3.70e-01 74.2% 33.0%
5012709 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 48.0 3.19e-01 72.6% 17.4%
1595160 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 47.0 3.53e-01 71.0% 30.0%
4414068 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 50.0 3.24e-01 100.0% 18.8%
5065366 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.68 50.0 4.04e-01 79.0% 44.2%
4453180 2492.1.1.4 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.68 61.0 3.96e-01 100.0% 90.7%
3940062 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.68 48.0 3.00e-01 74.2% 90.2%
3973139 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 43.0 3.22e-01 75.8% 30.4%
3370613 109.4.1.359 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C 0.63 55.0 3.42e-01 100.0% 19.0%
3678569 109.4.1.2687 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28645 0.63 52.0 3.37e-01 91.9% 55.8%
4936129 5067.1.1.2 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF 0.62 51.0 3.51e-01 91.9% 67.4%
3775772 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.62 53.0 3.40e-01 96.8% 32.6%
3588700 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.60 32.0 2.90e-01 98.4% 40.0%
3767125 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 47.0 3.03e-01 93.5% 59.4%
3248329 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 46.0 3.09e-01 96.8% 42.5%
3209516 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 48.0 3.27e-01 98.4% 87.1%
3971910 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.55 47.0 3.09e-01 100.0% 36.2%
3345562 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.53 38.0 2.51e-01 77.4% 34.9%
4000205 384.1.1.0 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like 0.52 27.0 2.94e-01 80.6% 54.0%
3629354 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.52 36.0 2.90e-01 72.6% 36.8%
1158442 10.32.1.5 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd 0.52 34.0 3.66e-01 100.0% 79.6%
3220597 7515.1.1.5 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.51 45.0 2.60e-01 96.8% 44.2%
4938240 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.51 41.0 3.02e-01 90.3% 66.9%
3924526 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.50 46.0 2.87e-01 100.0% 45.7%