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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00221
Bact-VirSCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00221
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-99
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00670__D5-100
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04386.19 best | SspB | 39.5 | 8.00e-10 | 100.0% | 64.1% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ou8A00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.92 | 88.0 | 8.37e-01 | 100.0% | 89.6% |
| 2nysA00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.81 | 74.0 | 6.85e-01 | 100.0% | 86.3% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 39.0 | 4.71e-01 | 88.2% | 100.0% |
| 1vq8Q00 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.63 | 43.0 | 4.32e-01 | 92.5% | 69.5% |
| 1v1cA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 40.0 | 4.54e-01 | 79.6% | 100.0% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.58 | 40.0 | 4.46e-01 | 92.5% | 100.0% |
| 3npfA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 38.0 | 4.28e-01 | 72.0% | 91.4% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 37.0 | 4.06e-01 | 81.7% | 86.7% |
| 1h10A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 38.0 | 3.52e-01 | 72.0% | 88.0% |
| 2kxcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 37.0 | 4.21e-01 | 86.0% | 100.0% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.54 | 43.0 | 4.20e-01 | 100.0% | 79.8% |
| 1vw4M01 | 2.30.30.790 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 43.0 | 3.84e-01 | 92.5% | 61.4% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.53 | 45.0 | 4.17e-01 | 100.0% | 79.5% |
| 1x5zA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.94e-01 | 100.0% | 74.3% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 4.12e-01 | 100.0% | 93.6% |
| 2z0qA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 36.0 | 3.27e-01 | 72.0% | 85.2% |
| 4jj0B00 | 2.30.42.60 | Mainly Beta › Roll › Pdz3 Domain › | 0.51 | 39.0 | 3.14e-01 | 79.6% | 61.1% |
| 1qyaB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.50 | 41.0 | 3.63e-01 | 92.5% | 97.2% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 605 | 4.1.2.1 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB | 0.92 | 88.0 | 8.37e-01 | 100.0% | 89.6% |
| 165392 | 4.1.2.1 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB | 0.82 | 76.0 | 6.93e-01 | 100.0% | 84.2% |
| 4559371 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 45.0 | 5.31e-01 | 92.5% | 98.4% |
| 4282868 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.68 | 47.0 | 5.28e-01 | 91.4% | 94.3% |
| 4270910 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.68 | 47.0 | 5.26e-01 | 91.4% | 94.3% |
| 4547801 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 45.0 | 4.62e-01 | 93.5% | 71.1% |
| 4079197 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 45.0 | 4.66e-01 | 94.6% | 74.1% |
| 3281945 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.66 | 48.0 | 4.92e-01 | 93.5% | 80.0% |
| 4141828 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.65 | 46.0 | 5.03e-01 | 93.5% | 93.2% |
| 4168737 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 46.0 | 5.03e-01 | 93.5% | 93.2% |
| 4087011 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 49.0 | 4.87e-01 | 93.5% | 80.0% |
| 4284598 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.64 | 43.0 | 4.39e-01 | 90.3% | 72.2% |
| 4593903 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.63 | 42.0 | 4.34e-01 | 89.2% | 71.1% |
| 4946972 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 42.0 | 4.32e-01 | 89.2% | 71.1% |
| 4937705 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.63 | 43.0 | 4.42e-01 | 91.4% | 73.3% |
| 5011500 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.63 | 44.0 | 4.34e-01 | 93.5% | 68.0% |
| 3598125 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 41.0 | 4.50e-01 | 86.0% | 82.7% |
| 4946028 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 43.0 | 4.36e-01 | 90.3% | 74.4% |
| 5050368 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.61 | 44.0 | 4.41e-01 | 96.8% | 74.5% |
| 5064571 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 39.0 | 4.00e-01 | 89.2% | 71.1% |
| 490 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.58 | 40.0 | 4.38e-01 | 93.5% | 90.5% |
| 1263580 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.58 | 40.0 | 4.41e-01 | 81.7% | 89.3% |
| 4668960 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 44.0 | 4.19e-01 | 92.5% | 69.1% |
| 3512419 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.56 | 41.0 | 4.27e-01 | 80.6% | 84.7% |
| 3684646 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 39.0 | 4.11e-01 | 97.8% | 83.7% |
| 3821287 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.56 | 44.0 | 3.88e-01 | 92.5% | 56.4% |
| 3281618 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.55 | 44.0 | 4.37e-01 | 93.5% | 82.0% |
| 4962778 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.55 | 45.0 | 4.51e-01 | 93.5% | 93.9% |
| 3738626 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.54 | 46.0 | 3.97e-01 | 94.6% | 82.8% |
| 3797477 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 35.0 | 3.97e-01 | 79.6% | 95.4% |
| 3925891 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 37.0 | 3.77e-01 | 72.0% | 97.8% |
| 3575581 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.53 | 45.0 | 3.75e-01 | 94.6% | 66.7% |
| 2552660 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.53 | 45.0 | 4.16e-01 | 100.0% | 79.5% |
| 2755606 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.52 | 44.0 | 3.37e-01 | 94.6% | 47.8% |
| 5056886 | 219.1.1.51 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 | 0.52 | 45.0 | 3.48e-01 | 94.6% | 49.8% |
| 4947399 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 29.0 | 2.95e-01 | 80.6% | 52.6% |
| 4340770 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.52 | 42.0 | 4.27e-01 | 93.5% | 93.7% |
| 3588663 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.52 | 40.0 | 3.99e-01 | 82.8% | 100.0% |
| 4400596 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.51 | 45.0 | 3.81e-01 | 98.9% | 78.1% |
| 3700518 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.51 | 44.0 | 4.03e-01 | 100.0% | 81.5% |
| 3282475 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.51 | 37.0 | 3.65e-01 | 78.5% | 99.0% |
| 3783073 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.51 | 44.0 | 4.28e-01 | 100.0% | 99.0% |
| 4055974 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.50 | 43.0 | 3.99e-01 | 100.0% | 82.4% |
| 3770803 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.50 | 43.0 | 4.13e-01 | 98.9% | 90.0% |
| 3960722 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.50 | 43.0 | 3.33e-01 | 100.0% | 81.5% |