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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00224
Bact-VirSCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00224
Identity
- Kingdom:
- phage
Quality
92.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-61
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4a2lF02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 52.0 | 3.31e-01 | 93.4% | 52.4% |
| 2jrbA00 | 3.30.250.20 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain | 0.62 | 38.0 | 3.76e-01 | 78.7% | 56.9% |
| 4wjsA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 52.0 | 3.22e-01 | 96.7% | 42.9% |
| 2avtB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.60 | 44.0 | 3.14e-01 | 77.0% | 44.2% |
| 1tltA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.60 | 46.0 | 3.40e-01 | 88.5% | 44.6% |
| 6qp9B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 50.0 | 3.04e-01 | 96.7% | 71.6% |
| 4fk5A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 52.0 | 3.33e-01 | 100.0% | 65.5% |
| 4tr6A01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.60 | 46.0 | 3.31e-01 | 83.6% | 67.8% |
| 4zgfA00 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 47.0 | 3.65e-01 | 88.5% | 73.0% |
| 4amwA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.59 | 46.0 | 2.93e-01 | 85.2% | 86.2% |
| 3t0pA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.59 | 46.0 | 3.29e-01 | 83.6% | 62.2% |
| 3pl2A01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.59 | 45.0 | 2.99e-01 | 83.6% | 57.0% |
| 3ikhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 44.0 | 2.88e-01 | 82.0% | 86.0% |
| 3tf8B00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.58 | 39.0 | 2.82e-01 | 70.5% | 60.9% |
| 6g6qA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 45.0 | 3.49e-01 | 86.9% | 99.3% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 49.0 | 3.15e-01 | 100.0% | 64.7% |
| 1itvA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.57 | 48.0 | 3.39e-01 | 95.1% | 62.1% |
| 1ospO02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.57 | 43.0 | 3.39e-01 | 86.9% | 49.3% |
| 3uuwB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 45.0 | 3.32e-01 | 91.8% | 45.7% |
| 5kiqA02 | 3.10.20.890 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 40.0 | 3.79e-01 | 80.3% | 62.5% |
| 1b77A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.54 | 38.0 | 2.66e-01 | 75.4% | 82.9% |
| 1tyyA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 44.0 | 2.87e-01 | 91.8% | 52.9% |
| 3kifD00 | 2.20.25.650 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like | 0.54 | 41.0 | 3.58e-01 | 82.0% | 90.1% |
| 2yj6A02 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.54 | 44.0 | 3.85e-01 | 93.4% | 69.5% |
| 4bs9A01 | 3.90.930.60 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.54 | 38.0 | 3.28e-01 | 73.8% | 74.7% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.54 | 40.0 | 3.36e-01 | 82.0% | 61.1% |
| 1k32A01 | 2.120.10.60 | Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain | 0.53 | 43.0 | 2.94e-01 | 98.4% | 36.4% |
| 3a2kA03 | 3.30.465.60 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.52 | 39.0 | 3.51e-01 | 82.0% | 72.1% |
| 3dlbA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 41.0 | 3.06e-01 | 91.8% | 65.7% |
| 2prvA00 | 3.40.1580.10 | Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like | 0.52 | 42.0 | 3.34e-01 | 100.0% | 65.4% |
| 6epkA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.52 | 37.0 | 3.55e-01 | 88.5% | 66.2% |
| 3pqhA01 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.52 | 36.0 | 3.70e-01 | 88.5% | 76.7% |
| 3eucA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 2.92e-01 | 78.7% | 49.6% |
| 3nksA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 38.0 | 2.28e-01 | 82.0% | 12.7% |
| 1eg3A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.51 | 30.0 | 3.46e-01 | 70.5% | 92.1% |
| 2wm1A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 39.0 | 2.53e-01 | 88.5% | 86.1% |
| 2dcnA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 39.0 | 2.53e-01 | 86.9% | 51.3% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.50 | 42.0 | 3.56e-01 | 95.1% | 58.9% |
| 3uboB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 38.0 | 2.46e-01 | 85.2% | 33.9% |
| 3umoA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 40.0 | 2.57e-01 | 88.5% | 85.4% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3289164 | 295.1.1.25 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF397 | 0.78 | 49.0 | 3.96e-01 | 82.0% | 35.5% |
| 3900771 | 330.9.1.0 ↗ | a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p | 0.68 | 42.0 | 4.26e-01 | 78.7% | 63.3% |
| 3576508 | 234.3.1.0 ↗ | a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain | 0.66 | 38.0 | 3.62e-01 | 82.0% | 48.6% |
| 5048065 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.64 | 45.0 | 3.87e-01 | 88.5% | 46.0% |
| 185632 | 5.1.4.26 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop | 0.63 | 52.0 | 3.32e-01 | 93.4% | 53.2% |
| 3554886 | 5.1.4.155 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 | 0.63 | 54.0 | 3.32e-01 | 98.4% | 50.0% |
| 3901822 | 5.1.5.50 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › MIOS_WD40 | 0.62 | 53.0 | 3.30e-01 | 98.4% | 50.6% |
| 3211099 | 5.1.4.271 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 | 0.62 | 50.0 | 3.29e-01 | 93.4% | 55.1% |
| 3996624 | 5.1.5.164 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd | 0.60 | 49.0 | 3.03e-01 | 91.8% | 48.0% |
| 3578914 | 5.1.5.170 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › B-prop_COPA_B_2nd | 0.59 | 51.0 | 3.36e-01 | 98.4% | 57.4% |
| 5024071 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 43.0 | 3.57e-01 | 80.3% | 62.6% |
| 3774407 | 109.21.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C | 0.59 | 50.0 | 2.81e-01 | 98.4% | 20.5% |
| 4629529 | 2002.1.1.420 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, PF25918 | 0.58 | 43.0 | 2.62e-01 | 80.3% | 21.0% |
| 4028315 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.58 | 39.0 | 3.21e-01 | 91.8% | 39.1% |
| None | — | 0.58 | 42.0 | 2.40e-01 | 80.3% | 68.1% | |
| 5071201 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.57 | 47.0 | 3.05e-01 | 91.8% | 90.8% |
| 4162022 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.57 | 42.0 | 3.83e-01 | 78.7% | 83.7% |
| 5011977 | 2006.1.2.9 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › PF27767 | 0.56 | 47.0 | 3.47e-01 | 93.4% | 36.5% |
| 3997581 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 47.0 | 2.99e-01 | 98.4% | 47.5% |
| 1318709 | 59.1.4.1 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N | 0.56 | 42.0 | 2.81e-01 | 80.3% | 66.8% |
| 4961538 | 2002.1.1.256 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MSH_C | 0.55 | 42.0 | 2.60e-01 | 85.2% | 40.0% |
| 5035483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 33.0 | 2.42e-01 | 78.7% | 19.4% |
| 3452325 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.55 | 48.0 | 3.41e-01 | 100.0% | 83.7% |
| 3381974 | 2003.1.2.47 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NDH2_C | 0.55 | 47.0 | 3.25e-01 | 100.0% | 46.2% |
| 3782688 | 59.1.4.1 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N | 0.55 | 41.0 | 2.97e-01 | 80.3% | 73.7% |
| 5049089 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 42.0 | 3.45e-01 | 86.9% | 65.8% |
| 3971964 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.55 | 44.0 | 3.58e-01 | 93.4% | 70.4% |
| 5015183 | 7528.1.1.0 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains | 0.55 | 45.0 | 3.78e-01 | 93.4% | 75.5% |
| 4182599 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.54 | 41.0 | 3.13e-01 | 83.6% | 83.2% |
| 3192398 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.54 | 48.0 | 2.81e-01 | 100.0% | 17.9% |
| 3959003 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.54 | 39.0 | 3.60e-01 | 93.4% | 56.5% |
| 3273029 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.54 | 47.0 | 3.16e-01 | 100.0% | 29.8% |
| 4975819 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.54 | 46.0 | 3.19e-01 | 100.0% | 35.1% |
| 4023722 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.54 | 45.0 | 2.76e-01 | 100.0% | 19.4% |
| 3858171 | 6129.1.1.0 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family | 0.54 | 42.0 | 2.81e-01 | 85.2% | 41.6% |
| 4159154 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.54 | 39.0 | 3.58e-01 | 80.3% | 65.9% |
| 1390065 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.53 | 36.0 | 3.13e-01 | 72.1% | 61.0% |
| 3374343 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.53 | 42.0 | 3.02e-01 | 91.8% | 76.1% |
| 4992892 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.53 | 45.0 | 2.99e-01 | 98.4% | 51.1% |
| 4956663 | 3291.1.1.49 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › NFACT_N | 0.53 | 32.0 | 2.59e-01 | 78.7% | 27.2% |
| 3951184 | 2003.1.2.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 | 0.53 | 45.0 | 2.72e-01 | 100.0% | 17.4% |
| 3962342 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 43.0 | 3.02e-01 | 100.0% | 39.2% |
| 4663253 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.53 | 37.0 | 3.28e-01 | 73.8% | 62.2% |
| 5049764 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 42.0 | 3.51e-01 | 91.8% | 65.2% |
| 4459995 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.52 | 41.0 | 3.48e-01 | 85.2% | 66.0% |
| 4810374 | 3740.1.1.1 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C | 0.52 | 43.0 | 2.97e-01 | 98.4% | 55.7% |
| 5036525 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.52 | 45.0 | 3.06e-01 | 100.0% | 50.0% |
| 5053814 | 3740.1.1.0 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta | 0.52 | 39.0 | 2.80e-01 | 85.2% | 81.0% |
| 4931543 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.52 | 43.0 | 2.92e-01 | 98.4% | 49.0% |
| 5980 | 227.1.1.9 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_PPF | 0.51 | 36.0 | 3.02e-01 | 73.8% | 64.5% |
| 3241635 | 206.1.1.28 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase | 0.51 | 36.0 | 2.67e-01 | 75.4% | 73.9% |
| 3688000 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.51 | 37.0 | 2.78e-01 | 82.0% | 32.4% |