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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00245
Bact-VirSCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00245
Identity
- Kingdom:
- phage
Quality
64.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-60
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e3mA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.70 | 58.0 | 4.21e-01 | 100.0% | 57.9% |
| 7nasX01 | 3.30.300.70 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › RimP-like superfamily, N-terminal | 0.62 | 48.0 | 4.16e-01 | 89.4% | 63.3% |
| 1dzfA01 | 3.40.1340.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide; Chain: A; domain 1 › RNA polymerase, Rpb5, N-terminal domain | 0.61 | 49.0 | 3.68e-01 | 100.0% | 68.1% |
| 3m21F00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.58 | 41.0 | 3.80e-01 | 78.7% | 67.2% |
| 5bq3A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 46.0 | 3.38e-01 | 100.0% | 37.4% |
| 3czqC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 41.0 | 2.60e-01 | 83.0% | 13.0% |
| 4b3fX01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 43.0 | 2.70e-01 | 87.2% | 27.4% |
| 8ebtA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 39.0 | 2.77e-01 | 78.7% | 27.4% |
| 4v19S00 | 3.30.420.80 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 | 0.56 | 44.0 | 3.32e-01 | 100.0% | 54.5% |
| 4u63A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 45.0 | 3.16e-01 | 100.0% | 48.9% |
| 3m4rA01 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.55 | 43.0 | 2.97e-01 | 100.0% | 22.9% |
| 7vyjB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 40.0 | 2.76e-01 | 78.7% | 96.2% |
| 4gniB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 41.0 | 2.97e-01 | 87.2% | 64.1% |
| 2zf8A02 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.54 | 38.0 | 3.23e-01 | 80.9% | 43.5% |
| 1oywA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 45.0 | 3.35e-01 | 100.0% | 65.2% |
| 3pvzA02 | 3.90.25.40 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › | 0.53 | 40.0 | 3.52e-01 | 100.0% | 53.2% |
| 1np6B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 42.0 | 3.22e-01 | 100.0% | 41.2% |
| 6b4kB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 39.0 | 2.77e-01 | 85.1% | 61.8% |
| 2y0cB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 42.0 | 2.95e-01 | 100.0% | 71.2% |
| 1hv8A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 38.0 | 2.78e-01 | 80.9% | 84.8% |
| 3ocrA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.53 | 40.0 | 2.56e-01 | 85.1% | 97.2% |
| 2d0bA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 44.0 | 2.86e-01 | 95.7% | 86.3% |
| 8g3lE01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 42.0 | 2.97e-01 | 100.0% | 56.7% |
| 3c3mA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 36.0 | 2.88e-01 | 100.0% | 30.1% |
| 8a6tB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 36.0 | 2.78e-01 | 83.0% | 41.4% |
| 3md7A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 41.0 | 2.66e-01 | 100.0% | 84.8% |
| 2bjiB02 | 3.40.190.80 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.51 | 40.0 | 3.06e-01 | 95.7% | 67.7% |
| 2y92A00 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.51 | 37.0 | 2.79e-01 | 85.1% | 30.7% |
| 8dfvA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 41.0 | 2.79e-01 | 100.0% | 90.1% |
| 3kn3A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 40.0 | 3.04e-01 | 91.5% | 57.6% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983861 | 281.1.1.2 ↗ | a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › ThiP_synth | 0.68 | 56.0 | 3.88e-01 | 97.9% | 28.6% |
| 3518537 | 2007.1.2.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 | 0.67 | 55.0 | 4.18e-01 | 100.0% | 83.8% |
| 3268852 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.66 | 50.0 | 4.71e-01 | 85.1% | 71.7% |
| 5003213 | 7523.1.1.5 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PDT | 0.63 | 50.0 | 4.02e-01 | 100.0% | 40.9% |
| 3210494 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.61 | 49.0 | 2.93e-01 | 100.0% | 28.0% |
| 3679779 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.60 | 48.0 | 3.06e-01 | 100.0% | 47.5% |
| 3599830 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 47.0 | 3.14e-01 | 100.0% | 47.6% |
| 4096594 | 2007.1.2.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_1 | 0.59 | 46.0 | 3.64e-01 | 100.0% | 61.6% |
| 4021888 | 2004.1.1.499 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2, Helicase_C_2 | 0.58 | 41.0 | 2.34e-01 | 78.7% | 84.1% |
| 3461386 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.58 | 46.0 | 3.15e-01 | 100.0% | 55.7% |
| 3601226 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.56 | 42.0 | 2.41e-01 | 85.1% | 9.8% |
| 4357948 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.56 | 38.0 | 2.47e-01 | 74.5% | 84.1% |
| 3427908 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 46.0 | 3.84e-01 | 100.0% | 90.5% |
| 3679871 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.56 | 41.0 | 2.39e-01 | 80.9% | 28.7% |
| 3934492 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.55 | 39.0 | 2.24e-01 | 80.9% | 18.4% |
| 3502580 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.55 | 44.0 | 3.10e-01 | 100.0% | 62.7% |
| 3257483 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.55 | 43.0 | 2.95e-01 | 97.9% | 64.8% |
| 3627919 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 39.0 | 2.18e-01 | 85.1% | 6.2% |
| 412628 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.53 | 42.0 | 2.72e-01 | 97.9% | 83.8% |
| 4106936 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.53 | 42.0 | 3.41e-01 | 93.6% | 45.0% |
| 5000389 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.53 | 41.0 | 3.22e-01 | 93.6% | 45.0% |
| 3196250 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.53 | 42.0 | 2.63e-01 | 100.0% | 49.4% |
| 177678 | 281.1.1.1 ↗ | a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II | 0.53 | 40.0 | 2.56e-01 | 85.1% | 97.2% |
| 3308007 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.53 | 40.0 | 2.24e-01 | 85.1% | 27.4% |
| 4398583 | 2004.1.1.428 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 | 0.52 | 39.0 | 2.21e-01 | 83.0% | 11.8% |
| None | — | 0.52 | 38.0 | 2.60e-01 | 93.6% | 52.4% | |
| 4974199 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.52 | 41.0 | 3.20e-01 | 100.0% | 67.4% |
| 3833581 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.51 | 40.0 | 2.67e-01 | 100.0% | 44.4% |
| 3573637 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.51 | 37.0 | 2.69e-01 | 85.1% | 90.3% |
| 3515721 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.51 | 39.0 | 2.64e-01 | 91.5% | 59.6% |
| 3672222 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.51 | 41.0 | 2.75e-01 | 97.9% | 50.4% |
| 3697679 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.51 | 41.0 | 2.55e-01 | 100.0% | 29.1% |
| 2320776 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.50 | 36.0 | 3.05e-01 | 83.0% | 40.2% |