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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00319

Bact-Vir

SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00319

Identity

Kingdom:
phage

Quality

82.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-64
PDB
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 66.0 5.46e-01 100.0% 51.1%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 65.0 6.35e-01 100.0% 82.1%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 62.0 5.84e-01 100.0% 70.3%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 65.0 6.44e-01 100.0% 87.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 68.0 6.59e-01 100.0% 86.0%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 58.0 6.14e-01 94.2% 91.3%
1wjsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 69.0 5.08e-01 100.0% 40.2%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 66.0 5.79e-01 100.0% 66.7%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 65.0 5.31e-01 100.0% 79.2%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 5.26e-01 100.0% 60.2%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 4.09e-01 92.3% 36.9%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.70 57.0 4.40e-01 92.3% 76.2%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 63.0 5.33e-01 100.0% 67.9%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.36e-01 94.2% 89.6%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 46.0 3.85e-01 71.2% 43.0%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.68 57.0 4.34e-01 92.3% 70.9%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 4.46e-01 100.0% 41.7%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 54.0 4.27e-01 92.3% 76.6%
6ya6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 53.0 4.38e-01 94.2% 91.8%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 4.78e-01 100.0% 60.5%
3fgtA01 2.10.70.60 Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 0.64 35.0 3.43e-01 100.0% 47.3%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 52.0 3.56e-01 94.2% 68.5%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.64 52.0 3.79e-01 96.2% 50.9%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.63 55.0 3.67e-01 100.0% 34.1%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 54.0 4.08e-01 100.0% 39.7%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 51.0 3.50e-01 94.2% 69.1%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.62 52.0 3.72e-01 100.0% 29.4%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 3.96e-01 98.1% 46.8%
3u04A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.62 51.0 3.68e-01 98.1% 73.8%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 51.0 3.70e-01 94.2% 59.1%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 46.0 4.43e-01 92.3% 73.8%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 47.0 3.66e-01 94.2% 82.6%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 39.0 2.61e-01 71.2% 24.8%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.58 46.0 3.62e-01 92.3% 72.6%
6serA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 40.0 2.68e-01 75.0% 19.7%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.57 43.0 3.11e-01 86.5% 66.3%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.57 50.0 2.94e-01 100.0% 34.6%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.57 47.0 3.62e-01 100.0% 92.6%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.76e-01 100.0% 82.9%
1ycyA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.37e-01 100.0% 80.6%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.56 43.0 3.12e-01 88.5% 28.3%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.39e-01 90.4% 75.6%
4ybvA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 45.0 3.48e-01 92.3% 86.0%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.54 40.0 3.11e-01 88.5% 33.9%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.29e-01 100.0% 70.8%
3p02A02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.53 43.0 3.20e-01 100.0% 86.3%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 43.0 3.92e-01 92.3% 87.5%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.23e-01 82.7% 74.5%
2qqpA03 2.60.40.4260 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.22e-01 96.2% 75.2%
1rl4B00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 40.0 3.02e-01 94.2% 48.7%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 3.07e-01 92.3% 74.1%
3el6A00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 41.0 2.67e-01 94.2% 74.9%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.51 40.0 3.18e-01 100.0% 81.0%
1owwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.38e-01 88.5% 80.6%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.51 41.0 3.06e-01 100.0% 88.1%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3578208 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 75.0 7.37e-01 100.0% 87.3%
3924377 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 74.0 7.33e-01 100.0% 89.1%
3927363 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 68.0 6.96e-01 100.0% 90.0%
3942573 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 73.0 7.02e-01 100.0% 87.9%
3932484 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 73.0 6.78e-01 100.0% 87.5%
3451171 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 68.0 6.33e-01 100.0% 75.4%
3933047 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.79 68.0 4.73e-01 100.0% 30.6%
3575865 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.78 67.0 6.09e-01 100.0% 71.4%
3457106 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.78 69.0 6.44e-01 100.0% 83.1%
3700770 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 70.0 6.67e-01 100.0% 88.3%
3333322 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.77 70.0 5.07e-01 100.0% 40.0%
3231154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 66.0 5.75e-01 100.0% 62.5%
3866571 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.77 68.0 3.94e-01 100.0% 11.7%
3240407 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.76 70.0 6.26e-01 100.0% 78.6%
3207081 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.76 66.0 6.18e-01 98.1% 93.8%
3342814 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.76 68.0 5.54e-01 100.0% 75.8%
3834112 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.76 67.0 5.83e-01 100.0% 90.0%
3368864 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.75 67.0 6.26e-01 100.0% 83.1%
3893808 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.74 64.0 3.95e-01 100.0% 16.2%
3296865 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.74 62.0 4.89e-01 100.0% 45.7%
3924375 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.74 68.0 5.92e-01 100.0% 73.3%
3709279 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.44e-01 100.0% 67.8%
3576940 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 62.0 4.01e-01 100.0% 21.3%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 66.0 5.56e-01 100.0% 84.7%
4015238 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.74 62.0 4.67e-01 100.0% 39.2%
3941170 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.74 67.0 6.02e-01 100.0% 78.6%
3890362 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 62.0 5.58e-01 92.3% 85.7%
3629316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 67.0 5.30e-01 100.0% 52.0%
3627859 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.73 67.0 5.86e-01 100.0% 73.3%
3996279 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.73 63.0 5.52e-01 100.0% 63.7%
3795384 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 67.0 4.33e-01 100.0% 24.2%
3448975 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.73 66.0 6.10e-01 100.0% 86.2%
3625264 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 61.0 4.98e-01 100.0% 50.5%
3890336 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.73 64.0 4.02e-01 100.0% 18.9%
3631165 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.38e-01 100.0% 75.3%
4937587 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.72 63.0 4.43e-01 100.0% 36.4%
3784612 219.1.1.115 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.71 62.0 4.36e-01 100.0% 40.0%
4293453 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.43e-01 100.0% 65.0%
4426276 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.50e-01 96.2% 84.3%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.71 62.0 5.40e-01 100.0% 73.8%
5039793 219.1.1.77 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF3335 0.70 60.0 4.06e-01 100.0% 32.2%
2321269 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.70 63.0 5.33e-01 100.0% 67.9%
4163661 4.1.1.446 beta barrels › SH3 › SH3 › SH3 › PF30222 0.70 63.0 5.74e-01 100.0% 80.9%
3392590 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.28e-01 90.4% 100.0%
3450544 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 52.0 4.42e-01 84.6% 87.1%
1905738 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.67 57.0 4.18e-01 100.0% 38.5%
4466506 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 57.0 5.10e-01 100.0% 77.3%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.05e-01 100.0% 81.3%
3967347 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 57.0 5.08e-01 100.0% 73.3%
4237287 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.65 54.0 4.12e-01 92.3% 75.0%
3420143 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.65 57.0 4.05e-01 100.0% 71.9%
3469125 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 57.0 4.25e-01 100.0% 84.6%
3233373 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.64 54.0 3.75e-01 100.0% 27.8%
5018860 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.64 57.0 4.08e-01 100.0% 44.0%
3189199 109.1.1.35 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › PF25907 0.63 53.0 3.46e-01 100.0% 20.4%
3727542 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.55e-01 100.0% 56.7%
3454710 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.63 55.0 3.63e-01 100.0% 49.1%
3736175 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 4.63e-01 100.0% 61.2%
3721314 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.62 53.0 4.18e-01 100.0% 52.2%
3973076 109.1.1.0 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.62 51.0 3.43e-01 100.0% 22.6%
5042986 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.98e-01 100.0% 91.7%
4570706 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.61 50.0 3.00e-01 96.2% 50.0%
3943282 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 50.0 3.89e-01 94.2% 74.2%
3433009 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.60 50.0 3.31e-01 100.0% 46.7%
3231705 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.81e-01 90.4% 93.3%
4538400 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.59 47.0 3.61e-01 92.3% 70.0%
3788462 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.55 46.0 2.90e-01 96.2% 34.6%
162092 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 39.0 3.15e-01 92.3% 83.2%
4054903 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 40.0 2.24e-01 94.2% 15.4%