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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00355
Bact-VirSCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00355
Identity
- Kingdom:
- phage
Quality
95.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-74
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mspB02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.76 | 47.0 | 4.60e-01 | 72.9% | 58.7% |
| 7dswA01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.69 | 50.0 | 3.12e-01 | 78.6% | 13.3% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.69 | 52.0 | 4.75e-01 | 82.9% | 60.6% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.67 | 43.0 | 4.62e-01 | 81.4% | 79.3% |
| 6k9pB02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.66 | 51.0 | 4.06e-01 | 85.7% | 96.7% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.64 | 44.0 | 3.85e-01 | 72.9% | 64.5% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.63 | 44.0 | 3.94e-01 | 75.7% | 50.5% |
| 1ng6A01 | 1.10.1510.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain | 0.63 | 42.0 | 3.93e-01 | 70.0% | 68.1% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.62 | 44.0 | 4.20e-01 | 85.7% | 62.1% |
| 5f4bA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.62 | 53.0 | 4.01e-01 | 97.1% | 90.8% |
| 3t0yA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 43.0 | 4.49e-01 | 74.3% | 78.8% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 43.0 | 4.10e-01 | 91.4% | 61.4% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.61 | 46.0 | 4.73e-01 | 84.3% | 86.8% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.60 | 42.0 | 3.96e-01 | 80.0% | 57.6% |
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.60 | 49.0 | 3.40e-01 | 94.3% | 39.4% |
| 1iuqA01 | 1.10.1200.50 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal | 0.60 | 50.0 | 4.93e-01 | 95.7% | 96.1% |
| 2ebiA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 38.0 | 3.87e-01 | 78.6% | 68.2% |
| 7x4eA01 | 1.10.1220.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE | 0.59 | 47.0 | 4.17e-01 | 90.0% | 97.2% |
| 2hekA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.58 | 50.0 | 3.33e-01 | 95.7% | 83.6% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 47.0 | 3.78e-01 | 85.7% | 51.5% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.58 | 39.0 | 3.74e-01 | 71.4% | 67.1% |
| 2o35A00 | 1.10.3340.10 | Mainly Alpha › Orthogonal Bundle › SMc04008-like fold › SMc04008-like | 0.57 | 38.0 | 3.75e-01 | 70.0% | 60.8% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 43.0 | 3.77e-01 | 80.0% | 59.3% |
| 7qaqA01 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.57 | 50.0 | 3.60e-01 | 100.0% | 47.9% |
| 1f68A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 44.0 | 3.95e-01 | 85.7% | 73.8% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 39.0 | 3.87e-01 | 71.4% | 72.6% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.56 | 41.0 | 3.54e-01 | 78.6% | 55.4% |
| 6qv3A05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 42.0 | 3.92e-01 | 88.6% | 63.4% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.55 | 41.0 | 3.97e-01 | 80.0% | 75.6% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 38.0 | 3.34e-01 | 71.4% | 87.3% |
| 1vgpA02 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.55 | 41.0 | 3.71e-01 | 94.3% | 56.7% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 44.0 | 3.56e-01 | 91.4% | 78.6% |
| 4ymuD00 | 1.10.3720.10 | Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like | 0.54 | 47.0 | 3.38e-01 | 100.0% | 60.0% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 39.0 | 3.07e-01 | 77.1% | 38.1% |
| 7s0rB01 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.54 | 44.0 | 4.36e-01 | 95.7% | 84.2% |
| 3h3mA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.54 | 37.0 | 3.44e-01 | 71.4% | 67.4% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 45.0 | 3.56e-01 | 95.7% | 92.7% |
| 1hxdA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 45.0 | 3.28e-01 | 95.7% | 43.7% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 39.0 | 3.38e-01 | 78.6% | 55.2% |
| 3o26A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 42.0 | 2.88e-01 | 94.3% | 55.8% |
| 2fgeA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 40.0 | 2.77e-01 | 84.3% | 74.0% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.51 | 36.0 | 3.53e-01 | 77.1% | 66.7% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.51 | 44.0 | 3.62e-01 | 100.0% | 70.1% |
| 4fm3A00 | 1.20.1270.390 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 42.0 | 3.82e-01 | 97.1% | 67.4% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3690556 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.80 | 54.0 | 5.79e-01 | 70.0% | 81.7% |
| 4422279 | 6130.1.1.1 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N | 0.71 | 56.0 | 5.54e-01 | 85.7% | 80.0% |
| 3198546 | 4120.1.1.63 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › PF30356 | 0.71 | 53.0 | 4.28e-01 | 80.0% | 66.7% |
| 4258320 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.71 | 54.0 | 5.14e-01 | 80.0% | 70.0% |
| 4982483 | 2486.1.1.0 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase | 0.69 | 53.0 | 3.13e-01 | 82.9% | 37.2% |
| None | — | 0.67 | 45.0 | 3.04e-01 | 75.7% | 18.1% | |
| 3939577 | 7516.1.1.33 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF273 | 0.66 | 53.0 | 3.76e-01 | 88.6% | 60.9% |
| 2795311 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.65 | 48.0 | 3.47e-01 | 80.0% | 67.1% |
| 2820008 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.65 | 44.0 | 3.34e-01 | 70.0% | 67.9% |
| 4281883 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.65 | 49.0 | 3.98e-01 | 81.4% | 43.7% |
| 3959593 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 42.0 | 3.20e-01 | 70.0% | 28.7% |
| 3210772 | 5001.1.1.133 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Git3, GPR_Gpa2_C | 0.63 | 48.0 | 3.21e-01 | 82.9% | 31.7% |
| 3938667 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.63 | 45.0 | 4.17e-01 | 75.7% | 67.8% |
| 4027497 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.62 | 46.0 | 4.91e-01 | 77.1% | 90.0% |
| 3504161 | 109.4.1.17 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin | 0.62 | 40.0 | 2.76e-01 | 74.3% | 18.8% |
| 3784055 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.62 | 44.0 | 3.56e-01 | 78.6% | 40.0% |
| 5053424 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.62 | 52.0 | 3.88e-01 | 95.7% | 62.5% |
| 3195747 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.61 | 52.0 | 5.22e-01 | 98.6% | 97.1% |
| 4014515 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 46.0 | 4.23e-01 | 84.3% | 70.5% |
| None | — | 0.61 | 42.0 | 2.49e-01 | 77.1% | 9.2% | |
| 1088836 | 101.38.1.0 ↗ | alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep | 0.60 | 42.0 | 3.64e-01 | 80.0% | 43.4% |
| 3673448 | 192.4.1.37 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Cas1_AcylT | 0.58 | 41.0 | 3.57e-01 | 75.7% | 49.2% |
| 3709879 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.58 | 45.0 | 4.45e-01 | 87.1% | 81.3% |
| 4973798 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.58 | 46.0 | 3.85e-01 | 91.4% | 60.7% |
| 3694617 | 633.23.1.9 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 | 0.58 | 40.0 | 2.84e-01 | 71.4% | 80.5% |
| 2966553 | 2005.1.1.31 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CDPS | 0.57 | 50.0 | 3.59e-01 | 100.0% | 47.4% |
| 3972666 | 4126.1.1.1 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA | 0.57 | 48.0 | 3.40e-01 | 94.3% | 63.6% |
| 3223055 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.57 | 42.0 | 2.39e-01 | 81.4% | 6.7% |
| 3221764 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.57 | 39.0 | 3.77e-01 | 71.4% | 66.3% |
| 3729389 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.57 | 41.0 | 3.23e-01 | 77.1% | 40.6% |
| 3961296 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.56 | 41.0 | 3.76e-01 | 81.4% | 57.4% |
| 3620861 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.56 | 42.0 | 3.36e-01 | 78.6% | 98.5% |
| 3993135 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 43.0 | 3.11e-01 | 81.4% | 77.9% |
| 3177239 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.56 | 41.0 | 3.31e-01 | 77.1% | 49.6% |
| 3505334 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.56 | 48.0 | 3.52e-01 | 100.0% | 74.6% |
| 4408604 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.55 | 40.0 | 2.74e-01 | 78.6% | 21.6% |
| 3602461 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.55 | 48.0 | 3.03e-01 | 100.0% | 86.3% |
| 3960206 | 191.1.1.27 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_25 | 0.54 | 41.0 | 3.56e-01 | 84.3% | 50.4% |
| 4453306 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.53 | 42.0 | 3.64e-01 | 87.1% | 58.8% |
| 3181501 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 45.0 | 3.17e-01 | 92.9% | 93.0% |
| 3603598 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.53 | 41.0 | 3.15e-01 | 88.6% | 60.6% |
| 4473738 | 131.1.1.1 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › PDEase_I | 0.52 | 44.0 | 3.26e-01 | 95.7% | 48.7% |
| 4026128 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.52 | 44.0 | 3.56e-01 | 100.0% | 93.3% |
| 4591251 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.52 | 42.0 | 3.97e-01 | 97.1% | 74.1% |
| 3623206 | 3567.1.1.10 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › MEIOC | 0.51 | 43.0 | 3.15e-01 | 91.4% | 36.8% |
| 4679869 | 632.15.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70 | 0.51 | 42.0 | 3.99e-01 | 97.1% | 75.3% |
| 3543090 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.50 | 39.0 | 3.37e-01 | 82.9% | 56.2% |