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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00366
Bact-VirSCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00366
Identity
- Kingdom:
- phage
Quality
69.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-60
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lexA00 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.68 | 57.0 | 5.28e-01 | 97.9% | 88.9% |
| 4l1nA00 | 2.40.128.660 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 | 0.64 | 46.0 | 3.28e-01 | 79.2% | 51.6% |
| 3ndaA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.62 | 47.0 | 3.52e-01 | 87.5% | 61.4% |
| 4u7aA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 47.0 | 2.86e-01 | 87.5% | 12.1% |
| 5c98B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.61 | 47.0 | 3.54e-01 | 87.5% | 62.8% |
| 8p2bA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.60 | 46.0 | 3.97e-01 | 85.4% | 88.7% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.60 | 45.0 | 3.77e-01 | 87.5% | 49.5% |
| 3igmA00 | 1.20.5.2050 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 42.0 | 4.07e-01 | 83.3% | 67.9% |
| 3a7rA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.59 | 44.0 | 3.68e-01 | 85.4% | 87.6% |
| 1kfiA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.58 | 46.0 | 3.65e-01 | 100.0% | 57.6% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.58 | 43.0 | 3.74e-01 | 87.5% | 50.0% |
| 3obyA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.57 | 41.0 | 3.18e-01 | 77.1% | 50.5% |
| 3gjyA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 42.0 | 2.68e-01 | 85.4% | 52.0% |
| 1ykdB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 38.0 | 2.62e-01 | 70.8% | 23.0% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 48.0 | 3.37e-01 | 100.0% | 36.2% |
| 1jnrB02 | 6.20.260.10 | Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain | 0.55 | 34.0 | 2.95e-01 | 70.8% | 36.1% |
| 8es5A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 44.0 | 3.36e-01 | 100.0% | 70.3% |
| 1vqzA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.54 | 39.0 | 3.39e-01 | 85.4% | 86.4% |
| 1b69A00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.53 | 39.0 | 3.60e-01 | 85.4% | 72.5% |
| 1nbwA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 40.0 | 3.16e-01 | 97.9% | 47.7% |
| 2lc4A00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 2.99e-01 | 81.2% | 36.9% |
| 1k0rA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.50 | 35.0 | 2.92e-01 | 77.1% | 53.5% |
| 2y1sA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.50 | 37.0 | 3.01e-01 | 85.4% | 73.1% |
| 3v5qB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 35.0 | 3.04e-01 | 79.2% | 87.4% |
| 1ei5A02 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 39.0 | 3.44e-01 | 95.8% | 67.1% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3308207 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.70 | 54.0 | 3.36e-01 | 85.4% | 25.8% |
| 3597697 | 5.1.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed | 0.70 | 54.0 | 3.60e-01 | 87.5% | 29.5% |
| 3582712 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 44.0 | 3.52e-01 | 72.9% | 31.4% |
| 3448800 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.67 | 48.0 | 3.77e-01 | 79.2% | 34.5% |
| 3597823 | 330.16.1.3 ↗ | a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › CEP19 | 0.64 | 43.0 | 3.85e-01 | 75.0% | 47.1% |
| 3657923 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.64 | 45.0 | 3.67e-01 | 75.0% | 37.9% |
| 4026200 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.63 | 48.0 | 4.28e-01 | 83.3% | 57.1% |
| 3895924 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.63 | 43.0 | 3.20e-01 | 75.0% | 61.4% |
| 3804385 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 46.0 | 4.33e-01 | 79.2% | 85.0% |
| 3935079 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 45.0 | 4.16e-01 | 79.2% | 95.4% |
| 3233582 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.63 | 47.0 | 2.92e-01 | 85.4% | 13.0% |
| 4054903 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.62 | 45.0 | 2.51e-01 | 81.2% | 51.5% |
| 3917645 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 46.0 | 3.50e-01 | 81.2% | 45.0% |
| 3230925 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.61 | 46.0 | 3.51e-01 | 87.5% | 89.2% |
| 5048008 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.57 | 39.0 | 2.74e-01 | 70.8% | 22.9% |
| 4410540 | 3321.1.1.1 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander | 0.57 | 42.0 | 3.61e-01 | 83.3% | 92.9% |
| 3310689 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.56 | 41.0 | 3.22e-01 | 85.4% | 92.0% |
| 4131948 | 220.1.1.186 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CAYP2 | 0.56 | 38.0 | 3.09e-01 | 70.8% | 37.0% |
| 3619778 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 37.0 | 2.36e-01 | 70.8% | 11.8% |
| 4927866 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.56 | 39.0 | 2.52e-01 | 75.0% | 53.7% |
| 3279624 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.56 | 39.0 | 2.77e-01 | 77.1% | 91.4% |
| 2418839 | 12.6.1.4 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M | 0.56 | 47.0 | 3.59e-01 | 100.0% | 45.4% |
| 4938531 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.55 | 42.0 | 2.97e-01 | 85.4% | 45.3% |
| 3272992 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.55 | 44.0 | 3.26e-01 | 100.0% | 63.9% |
| 3684267 | 5.1.10.15 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RPE65 | 0.55 | 40.0 | 3.01e-01 | 87.5% | 30.0% |
| 3323289 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.54 | 37.0 | 3.32e-01 | 72.9% | 52.9% |
| 3606266 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 43.0 | 2.53e-01 | 100.0% | 24.7% |
| 3790608 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.53 | 45.0 | 3.45e-01 | 95.8% | 65.5% |
| 3618049 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.53 | 40.0 | 2.74e-01 | 85.4% | 85.4% |
| 3417430 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.53 | 42.0 | 3.45e-01 | 100.0% | 61.9% |
| 3405285 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.53 | 42.0 | 3.68e-01 | 93.8% | 93.8% |
| 3492079 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.52 | 38.0 | 3.15e-01 | 83.3% | 52.6% |
| 3324935 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 36.0 | 2.91e-01 | 75.0% | 84.0% |
| 4442902 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.52 | 38.0 | 2.96e-01 | 85.4% | 90.4% |
| 4273393 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.50 | 40.0 | 3.44e-01 | 100.0% | 66.3% |