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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00460
Bact-VirSCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00460
Identity
- Kingdom:
- phage
Quality
97.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-98
Domain cluster:
rep: peptidyl-tRNA_hydrolase__YP_009447948__Flamingopox_virus_FGPVKD09__2059380__D17-122
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gaxA00 | 3.40.1490.10 | Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 | 0.76 | 70.0 | 6.25e-01 | 100.0% | 96.3% |
| 2r75102 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.64 | 38.0 | 3.64e-01 | 89.7% | 50.0% |
| 3p12A01 | 3.40.1650.10 | Alpha Beta › 3-Layer(aba) Sandwich › RbsD-like fold › RbsD-like domain | 0.64 | 43.0 | 4.02e-01 | 86.6% | 54.8% |
| 4lq6A00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.60 | 45.0 | 3.47e-01 | 78.4% | 79.3% |
| 3i3fB00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.60 | 34.0 | 3.14e-01 | 92.8% | 41.4% |
| 2fltA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.58 | 47.0 | 4.49e-01 | 89.7% | 95.7% |
| 3cb2A02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.56 | 34.0 | 3.42e-01 | 89.7% | 57.6% |
| 3n4dA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.56 | 46.0 | 4.05e-01 | 88.7% | 77.1% |
| 1ofuA02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.56 | 34.0 | 3.47e-01 | 89.7% | 61.3% |
| 2ycdA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 38.0 | 3.95e-01 | 90.7% | 77.9% |
| 2wkbA01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.56 | 46.0 | 4.64e-01 | 89.7% | 99.0% |
| 4lhpF00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.56 | 46.0 | 4.17e-01 | 89.7% | 84.6% |
| 2aajA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.56 | 45.0 | 4.18e-01 | 89.7% | 88.4% |
| 2nbsA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 36.0 | 3.40e-01 | 91.8% | 54.3% |
| 1mwwB00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.56 | 45.0 | 4.28e-01 | 88.7% | 93.2% |
| 3v7eA00 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.55 | 32.0 | 3.50e-01 | 86.6% | 67.9% |
| 8dq6A01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.54 | 44.0 | 4.39e-01 | 88.7% | 100.0% |
| 2xczA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.54 | 44.0 | 4.25e-01 | 89.7% | 89.5% |
| 2jwnA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 37.0 | 3.71e-01 | 72.2% | 89.0% |
| 1iloA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 36.0 | 3.97e-01 | 81.4% | 87.0% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 35.0 | 3.27e-01 | 91.8% | 54.2% |
| 1i9gA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 41.0 | 3.30e-01 | 81.4% | 91.3% |
| 1dbfA00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.53 | 41.0 | 3.76e-01 | 82.5% | 86.6% |
| 3oo8A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 39.0 | 3.24e-01 | 78.4% | 89.7% |
| 3fkfD00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 32.0 | 2.89e-01 | 92.8% | 42.3% |
| 4u5pA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.51 | 42.0 | 3.76e-01 | 90.7% | 77.1% |
| 4oqjA02 | 3.30.70.3290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 3.36e-01 | 74.2% | 98.4% |
| 7febA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.50 | 39.0 | 3.65e-01 | 86.6% | 100.0% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3741182 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.91 | 87.0 | 7.49e-01 | 100.0% | 80.7% |
| 4025295 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.91 | 87.0 | 7.73e-01 | 100.0% | 96.9% |
| 3990988 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.91 | 86.0 | 7.78e-01 | 100.0% | 99.2% |
| 3595444 | 2501.1.1.0 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II | 0.90 | 85.0 | 7.46e-01 | 100.0% | 91.9% |
| 3628884 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.88 | 84.0 | 7.87e-01 | 100.0% | 97.3% |
| 10995 | 2501.1.1.2 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › DUF2000 | 0.76 | 70.0 | 6.24e-01 | 100.0% | 95.6% |
| 4021134 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.62 | 43.0 | 3.43e-01 | 89.7% | 36.3% |
| 3386250 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.60 | 44.0 | 3.51e-01 | 78.4% | 90.5% |
| 3783636 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.59 | 43.0 | 3.04e-01 | 77.3% | 68.7% |
| 3279157 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.58 | 48.0 | 4.46e-01 | 90.7% | 84.8% |
| 4869518 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.57 | 39.0 | 4.37e-01 | 89.7% | 98.6% |
| 5062261 | 101.1.2.892 ↗ | alpha arrays › HTH › HTH › winged helix domain › ArsR | 0.57 | 34.0 | 3.40e-01 | 89.7% | 57.0% |
| 3989329 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.57 | 43.0 | 4.33e-01 | 89.7% | 81.1% |
| 4045130 | 315.1.1.9 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase, Tautomerase_2 | 0.56 | 46.0 | 4.29e-01 | 90.7% | 92.8% |
| 143091 | 315.1.1.9 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase, Tautomerase_2 | 0.56 | 46.0 | 4.18e-01 | 90.7% | 87.0% |
| 4936 | 315.1.1.9 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase, Tautomerase_2 | 0.55 | 45.0 | 4.13e-01 | 88.7% | 88.3% |
| 4422529 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.55 | 41.0 | 3.31e-01 | 79.4% | 42.1% |
| 3566940 | 219.1.1.78 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Guanylate_cyc_2 | 0.55 | 37.0 | 2.93e-01 | 70.1% | 77.8% |
| 3400758 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.55 | 40.0 | 3.79e-01 | 91.8% | 64.3% |
| 3184127 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.55 | 33.0 | 3.70e-01 | 88.7% | 77.3% |
| 5057997 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.54 | 37.0 | 3.48e-01 | 91.8% | 56.0% |
| 3277732 | 6094.1.1.3 ↗ | a+b two layers › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › CurL-like_PKS_C | 0.52 | 38.0 | 3.29e-01 | 76.3% | 95.3% |
| 5047446 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 42.0 | 3.98e-01 | 90.7% | 96.7% |
| 1507195 | 6094.1.1.3 ↗ | a+b two layers › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › CurL-like_PKS_C | 0.51 | 37.0 | 3.34e-01 | 76.3% | 88.2% |
| 4198042 | 7523.1.1.30 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_11 | 0.51 | 37.0 | 3.57e-01 | 77.3% | 98.3% |
| 4449681 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 41.0 | 4.08e-01 | 88.7% | 86.7% |
| 4034385 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.51 | 34.0 | 3.33e-01 | 91.8% | 60.0% |
| 5057051 | 304.130.1.0 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain | 0.51 | 33.0 | 3.70e-01 | 100.0% | 86.7% |
| 3200932 | 2485.1.1.18 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SH3BGR | 0.51 | 34.0 | 3.38e-01 | 91.8% | 65.0% |