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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00491
Bact-VirSCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00491
Identity
- Kingdom:
- phage
Quality
57.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-103
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.72 | 57.0 | 5.21e-01 | 85.3% | 78.4% |
| 1paqA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.70 | 48.0 | 3.76e-01 | 70.7% | 63.4% |
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.68 | 48.0 | 4.93e-01 | 74.7% | 87.5% |
| 1xriA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.68 | 47.0 | 3.76e-01 | 73.3% | 55.0% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.66 | 45.0 | 3.86e-01 | 70.7% | 47.1% |
| 1qdmA03 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.66 | 47.0 | 4.71e-01 | 76.0% | 90.9% |
| 3rrcB01 | 1.20.1310.20 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain | 0.65 | 45.0 | 3.56e-01 | 72.0% | 51.3% |
| 4kvmA01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 45.0 | 2.72e-01 | 72.0% | 12.4% |
| 2yxlA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.64 | 52.0 | 4.19e-01 | 90.7% | 68.4% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.64 | 43.0 | 4.38e-01 | 73.3% | 73.2% |
| 1pbwB00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.64 | 43.0 | 3.23e-01 | 70.7% | 55.4% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 45.0 | 4.71e-01 | 76.0% | 84.8% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 47.0 | 4.72e-01 | 92.0% | 82.1% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 45.0 | 3.61e-01 | 84.0% | 47.0% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.60 | 50.0 | 4.16e-01 | 96.0% | 76.8% |
| 2b4lA02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.59 | 46.0 | 3.65e-01 | 85.3% | 82.2% |
| 4gtnA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.56 | 38.0 | 3.85e-01 | 70.7% | 73.0% |
| 2cvzA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 46.0 | 3.91e-01 | 96.0% | 72.0% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.55 | 38.0 | 3.39e-01 | 72.0% | 81.7% |
| 1mtzA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 43.0 | 2.99e-01 | 90.7% | 66.9% |
| 4muoA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.53 | 36.0 | 3.70e-01 | 70.7% | 75.0% |
| 1m4rB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 36.0 | 2.97e-01 | 70.7% | 79.4% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.53 | 35.0 | 3.47e-01 | 86.7% | 64.6% |
| 4hhxA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.52 | 41.0 | 3.72e-01 | 86.7% | 90.4% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.52 | 35.0 | 3.20e-01 | 70.7% | 87.9% |
| 2of7A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 44.0 | 3.68e-01 | 100.0% | 77.1% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5019592 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.78 | 56.0 | 3.86e-01 | 74.7% | 40.4% |
| 3958076 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.77 | 57.0 | 3.69e-01 | 77.3% | 47.7% |
| 4501343 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.77 | 54.0 | 6.24e-01 | 74.7% | 100.0% |
| 4932774 | 101.40.1.1 ↗ | alpha arrays › HTH › 40S ribosomal protein S13 N-terminal domain › 40S ribosomal protein S13 N-terminal domain › Ribosomal_S13_N | 0.75 | 52.0 | 5.10e-01 | 72.0% | 68.8% |
| 3963583 | 2008.1.1.67 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C | 0.73 | 53.0 | 3.49e-01 | 77.3% | 46.2% |
| 5034762 | 195.1.1.0 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like | 0.72 | 51.0 | 4.18e-01 | 73.3% | 63.0% |
| 3993576 | 610.3.1.3 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 | 0.72 | 50.0 | 3.85e-01 | 72.0% | 37.6% |
| 3672635 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.69 | 49.0 | 4.97e-01 | 74.7% | 80.0% |
| 5028132 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.69 | 47.0 | 4.63e-01 | 70.7% | 70.0% |
| 3932714 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.68 | 58.0 | 5.49e-01 | 93.3% | 92.2% |
| 4015513 | 610.4.1.1 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY | 0.68 | 47.0 | 3.80e-01 | 73.3% | 81.3% |
| 3274434 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.66 | 57.0 | 5.48e-01 | 94.7% | 96.5% |
| 3262552 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.66 | 53.0 | 5.34e-01 | 86.7% | 98.7% |
| 3248091 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.66 | 57.0 | 5.47e-01 | 94.7% | 97.6% |
| 3277060 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.65 | 52.0 | 5.26e-01 | 86.7% | 100.0% |
| 1566530 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.65 | 55.0 | 5.43e-01 | 93.3% | 98.8% |
| 3269593 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.65 | 55.0 | 5.43e-01 | 93.3% | 98.8% |
| 3283752 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.65 | 46.0 | 4.25e-01 | 78.7% | 58.9% |
| 3273958 | 198.1.1.10 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin | 0.65 | 55.0 | 5.31e-01 | 94.7% | 95.3% |
| 3252439 | 198.1.1.10 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin | 0.64 | 55.0 | 5.39e-01 | 94.7% | 100.0% |
| 3213565 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.63 | 54.0 | 5.41e-01 | 93.3% | 100.0% |
| 4972252 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.62 | 51.0 | 4.24e-01 | 92.0% | 77.1% |
| 4996152 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.62 | 56.0 | 5.25e-01 | 97.3% | 96.7% |
| 3196401 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 40.0 | 4.50e-01 | 76.0% | 92.7% |
| 3257352 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.60 | 47.0 | 4.63e-01 | 85.3% | 96.2% |
| 3908992 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.60 | 50.0 | 4.66e-01 | 93.3% | 73.7% |
| 3239718 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 46.0 | 4.84e-01 | 88.0% | 96.9% |
| 4390290 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.60 | 46.0 | 4.84e-01 | 86.7% | 98.5% |
| 3337658 | 610.3.1.3 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 | 0.59 | 41.0 | 3.18e-01 | 73.3% | 35.1% |
| 3965372 | 195.1.1.0 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like | 0.58 | 46.0 | 4.08e-01 | 90.7% | 76.7% |
| 5034431 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.57 | 46.0 | 3.77e-01 | 89.3% | 73.6% |
| 5025254 | 183.1.1.1 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C | 0.56 | 46.0 | 3.77e-01 | 89.3% | 77.0% |
| 3410813 | 190.1.1.5 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › Protamine_like | 0.55 | 32.0 | 3.48e-01 | 88.0% | 67.7% |
| 4982068 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.55 | 44.0 | 3.52e-01 | 86.7% | 70.3% |
| 3925313 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.55 | 43.0 | 4.28e-01 | 89.3% | 98.8% |
| 4985324 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.54 | 42.0 | 3.37e-01 | 85.3% | 65.2% |
| 4928573 | 183.1.1.5 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repress | 0.54 | 41.0 | 3.61e-01 | 82.7% | 85.2% |
| 4664858 | 184.1.1.1 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N | 0.53 | 36.0 | 3.69e-01 | 70.7% | 72.0% |
| 1514597 | 184.1.1.1 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N | 0.53 | 36.0 | 3.69e-01 | 70.7% | 74.0% |
| 2983780 | 184.1.1.0 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N | 0.53 | 37.0 | 3.74e-01 | 72.0% | 74.3% |
| 3788788 | 2485.1.1.51 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_14 | 0.52 | 40.0 | 2.84e-01 | 85.3% | 45.3% |
| 3960348 | 184.1.1.1 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N | 0.52 | 35.0 | 3.60e-01 | 70.7% | 72.0% |
| 3943344 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.51 | 43.0 | 3.54e-01 | 94.7% | 78.6% |
| 3397412 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.51 | 33.0 | 3.30e-01 | 88.0% | 65.3% |
| 3235055 | 3065.1.1.2 ↗ | alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Gp-FAR-1 | 0.50 | 38.0 | 3.15e-01 | 85.3% | 88.4% |