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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00500
Bact-VirSCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00500
Identity
- Kingdom:
- phage
Quality
90.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 351-429
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04293.21 best | SpoVR | 73.9 | 1.60e-20 | 100.0% | 18.2% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l6nA02 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.54 | 44.0 | 3.80e-01 | 92.4% | 96.9% |
| 1oeyA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 38.0 | 3.79e-01 | 75.9% | 91.5% |
| 1wp1B01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.53 | 36.0 | 2.39e-01 | 70.9% | 97.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4964858 | 2498.1.1.103 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SpoVR | 0.67 | 54.0 | 3.52e-01 | 87.3% | 26.1% |
| 5005164 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.55 | 35.0 | 3.26e-01 | 89.9% | 48.1% |
| 3740916 | 1013.1.1.1 ↗ | beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › DUF3337 | 0.52 | 37.0 | 2.95e-01 | 75.9% | 41.5% |
| 3541292 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 31.0 | 2.85e-01 | 79.7% | 45.7% |
D2
high
residues 431-496
Domain cluster:
rep: LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00333__D39-91
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24755.3 best | SpoVR_C | 95.3 | 2.30e-27 | 83.3% | 100.0% |
D3
medium
residues 1-185
Domain cluster:
rep: LC754405.1__BDX35488.1__MN1_210__00021__D1-170_235-296
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04293.21 best | SpoVR | 258.1 | 1.80e-76 | 95.1% | 42.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3970775 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.88 | 55.0 | 4.62e-01 | 90.8% | 42.2% |
| 4567770 | 2005.1.1.38 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTU2 | 0.53 | 38.0 | 3.12e-01 | 73.0% | 88.1% |
| 4143986 | 2005.1.1.38 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTU2 | 0.52 | 37.0 | 3.06e-01 | 74.1% | 84.6% |