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SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00513
Bact-VirSCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00513
Identity
- Kingdom:
- phage
Quality
83.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-53
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cxiA03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.67 | 52.0 | 4.64e-01 | 100.0% | 60.0% |
| 4ha8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 50.0 | 4.65e-01 | 100.0% | 65.1% |
| 1mzbA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 51.0 | 4.33e-01 | 91.5% | 50.0% |
| 3ajdA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.65 | 48.0 | 4.55e-01 | 100.0% | 65.0% |
| 5deqB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 52.0 | 4.53e-01 | 100.0% | 63.9% |
| 7k98E03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.64 | 50.0 | 4.52e-01 | 100.0% | 61.8% |
| 1g6sA02 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.62 | 51.0 | 3.31e-01 | 91.5% | 25.5% |
| 3b0bC02 | 6.10.130.30 | Special › Helix non-globular › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.62 | 44.0 | 4.56e-01 | 100.0% | 83.7% |
| 2x3lA01 | 3.90.1150.150 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.62 | 45.0 | 3.52e-01 | 89.4% | 35.2% |
| 2ly1A03 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.62 | 51.0 | 4.43e-01 | 100.0% | 60.5% |
| 2qgqA01 | 3.80.30.20 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › tm_1862 like domain | 0.60 | 45.0 | 2.90e-01 | 80.9% | 42.9% |
| 2p5kA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 47.0 | 4.40e-01 | 95.7% | 68.3% |
| 4p72A04 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.59 | 48.0 | 4.19e-01 | 100.0% | 57.9% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.59 | 40.0 | 3.27e-01 | 70.2% | 87.2% |
| 1fnnA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 42.0 | 3.33e-01 | 76.6% | 34.7% |
| 3oajA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 44.0 | 3.19e-01 | 100.0% | 27.1% |
| 2xfvA00 | 3.10.260.30 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › | 0.59 | 46.0 | 3.78e-01 | 100.0% | 51.9% |
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.59 | 39.0 | 3.73e-01 | 70.2% | 68.4% |
| 7ovuA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 45.0 | 3.04e-01 | 85.1% | 72.0% |
| 1tuzA00 | 1.10.238.110 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Diacylglycerol kinase alpha. | 0.58 | 47.0 | 3.70e-01 | 100.0% | 41.5% |
| 3tw6B03 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 46.0 | 2.61e-01 | 89.4% | 13.1% |
| 2dznF00 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 40.0 | 3.58e-01 | 100.0% | 50.7% |
| 7v7yA01 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.56 | 48.0 | 2.98e-01 | 100.0% | 92.5% |
| 1w5sA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 37.0 | 3.15e-01 | 100.0% | 37.5% |
| 1ng6A01 | 1.10.1510.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain | 0.56 | 43.0 | 3.56e-01 | 87.2% | 72.5% |
| 3mcpA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 45.0 | 2.99e-01 | 97.9% | 34.4% |
| 2istA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.56 | 44.0 | 3.91e-01 | 100.0% | 58.3% |
| 1l0oC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 43.0 | 4.14e-01 | 93.6% | 75.4% |
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 46.0 | 3.39e-01 | 100.0% | 62.3% |
| 4nn2B00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 44.0 | 3.38e-01 | 93.6% | 65.3% |
| 1vw4H00 | 3.90.1180.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 | 0.54 | 43.0 | 3.18e-01 | 95.7% | 78.4% |
| 3hz7A00 | 3.30.110.40 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain | 0.53 | 44.0 | 3.94e-01 | 100.0% | 95.9% |
| 3smvA02 | 1.10.150.750 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.53 | 46.0 | 3.97e-01 | 100.0% | 98.7% |
| 3alfA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 41.0 | 3.71e-01 | 93.6% | 87.1% |
| 4c1sA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.52 | 42.0 | 2.46e-01 | 89.4% | 18.1% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 41.0 | 2.67e-01 | 89.4% | 33.3% |
| 2l2oA00 | 1.10.10.1540 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain | 0.51 | 40.0 | 3.53e-01 | 100.0% | 58.8% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5050777 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.88 | 60.0 | 4.97e-01 | 70.2% | 45.3% |
| 5049129 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.87 | 58.0 | 4.89e-01 | 70.2% | 45.3% |
| 5041631 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 63.0 | 5.98e-01 | 100.0% | 74.5% |
| 4187720 | 206.1.3.2 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GARS_A | 0.78 | 53.0 | 3.24e-01 | 70.2% | 13.5% |
| 4961900 | 101.1.1.187 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 | 0.77 | 55.0 | 4.71e-01 | 76.6% | 48.0% |
| 3198858 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 54.0 | 4.74e-01 | 76.6% | 51.4% |
| 3282970 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 61.0 | 5.55e-01 | 100.0% | 83.1% |
| 3515356 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 61.0 | 5.34e-01 | 100.0% | 72.0% |
| 5065832 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 62.0 | 4.88e-01 | 100.0% | 52.0% |
| 4975301 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.70 | 57.0 | 4.95e-01 | 100.0% | 57.3% |
| 3789067 | 148.1.1.10 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TAFII28 | 0.70 | 47.0 | 3.55e-01 | 72.3% | 27.5% |
| 4979322 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.70 | 49.0 | 4.29e-01 | 74.5% | 57.1% |
| 4073708 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.68 | 56.0 | 4.59e-01 | 100.0% | 48.9% |
| 3508036 | 108.1.1.31 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › DAG_kinase_N | 0.68 | 51.0 | 5.02e-01 | 97.9% | 78.0% |
| 5000704 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 55.0 | 4.66e-01 | 100.0% | 54.4% |
| 5071343 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 53.0 | 4.34e-01 | 91.5% | 51.6% |
| 5060154 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.67 | 54.0 | 4.80e-01 | 100.0% | 61.4% |
| 3291502 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.66 | 56.0 | 5.24e-01 | 100.0% | 78.3% |
| 5008984 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.66 | 52.0 | 4.35e-01 | 100.0% | 47.8% |
| 5048905 | 101.1.9.20 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 | 0.65 | 54.0 | 4.67e-01 | 100.0% | 57.5% |
| 3585710 | 2484.1.1.36 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 | 0.65 | 55.0 | 3.92e-01 | 97.9% | 32.4% |
| 4973290 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 55.0 | 4.92e-01 | 100.0% | 71.4% |
| 4096180 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.65 | 52.0 | 4.88e-01 | 100.0% | 71.7% |
| 4997429 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 54.0 | 5.38e-01 | 100.0% | 92.0% |
| 3249045 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.64 | 54.0 | 4.03e-01 | 100.0% | 40.8% |
| 4992586 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.64 | 53.0 | 4.83e-01 | 100.0% | 69.2% |
| 4009179 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 54.0 | 4.44e-01 | 100.0% | 57.8% |
| 5077022 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.64 | 55.0 | 4.35e-01 | 100.0% | 54.0% |
| 4968961 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.63 | 50.0 | 4.34e-01 | 100.0% | 55.0% |
| 5070167 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 46.0 | 4.48e-01 | 80.9% | 69.1% |
| 3604634 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.63 | 52.0 | 4.87e-01 | 100.0% | 75.0% |
| 3917497 | 386.1.1.349 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF462_11, zf-C2H2_7th_ZNF462 | 0.63 | 52.0 | 4.56e-01 | 95.7% | 77.3% |
| 4106869 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.62 | 52.0 | 4.61e-01 | 100.0% | 62.9% |
| 3632862 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 53.0 | 4.14e-01 | 100.0% | 72.7% |
| 4278077 | 304.158.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Csy2 | 0.62 | 49.0 | 3.14e-01 | 100.0% | 33.2% |
| 4608195 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.62 | 50.0 | 4.35e-01 | 100.0% | 57.3% |
| 3631314 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 43.0 | 3.80e-01 | 78.7% | 48.0% |
| 4031678 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.61 | 51.0 | 4.63e-01 | 100.0% | 69.2% |
| 4188749 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.61 | 50.0 | 4.24e-01 | 100.0% | 55.0% |
| 4653130 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.61 | 50.0 | 4.01e-01 | 100.0% | 46.3% |
| 4169295 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.60 | 48.0 | 3.99e-01 | 100.0% | 47.8% |
| 4122250 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 45.0 | 2.85e-01 | 93.6% | 14.2% |
| 2056822 | 101.1.2.213 ↗ | alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD | 0.60 | 49.0 | 4.34e-01 | 100.0% | 69.7% |
| 4625844 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.60 | 47.0 | 4.22e-01 | 93.6% | 60.0% |
| 3348879 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 47.0 | 4.68e-01 | 100.0% | 90.0% |
| 3332350 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 45.0 | 3.27e-01 | 91.5% | 31.0% |
| 4121495 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 38.0 | 3.42e-01 | 76.6% | 44.0% |
| 4993637 | 7516.1.1.23 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF2064 | 0.57 | 43.0 | 2.79e-01 | 87.2% | 24.0% |
| 3511269 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.57 | 42.0 | 3.22e-01 | 83.0% | 51.7% |
| 4547746 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 41.0 | 3.38e-01 | 100.0% | 40.0% |
| 5073781 | 219.1.1.153 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N | 0.57 | 48.0 | 3.21e-01 | 100.0% | 54.4% |
| 3004998 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.56 | 46.0 | 3.85e-01 | 100.0% | 50.6% |
| 5049339 | 4004.1.1.1 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › YegS_C | 0.56 | 47.0 | 3.17e-01 | 97.9% | 64.6% |
| 3987909 | 138.1.1.9 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C | 0.55 | 47.0 | 3.48e-01 | 100.0% | 86.7% |
| 4961224 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.55 | 42.0 | 3.73e-01 | 95.7% | 55.7% |
| 5065253 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.55 | 39.0 | 3.45e-01 | 93.6% | 47.5% |
| 4957284 | 219.1.1.153 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N | 0.55 | 46.0 | 3.18e-01 | 100.0% | 56.6% |
| 4964720 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.55 | 42.0 | 2.68e-01 | 85.1% | 22.0% |
| 5005187 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 43.0 | 2.76e-01 | 95.7% | 47.8% |
| 3714653 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 39.0 | 3.40e-01 | 78.7% | 91.1% |
| 3595497 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 41.0 | 2.70e-01 | 97.9% | 21.1% |
| 4433372 | 192.11.1.2 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › CysS_C | 0.52 | 44.0 | 2.93e-01 | 93.6% | 25.4% |
| 4013689 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.50 | 40.0 | 2.93e-01 | 97.9% | 60.8% |