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SCNpilot_solid_1_scaffold_45_prodigal-single.1__X__X__00081

Bact-Vir

SCNpilot_solid_1_scaffold_45_prodigal-single.1__X__X__00081

Identity

Kingdom:
phage

Quality

85.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-66
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.67 43.0 3.89e-01 71.9% 48.8%
1fwxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 47.0 2.81e-01 75.0% 22.3%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 45.0 3.96e-01 71.9% 68.8%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 45.0 2.87e-01 71.9% 24.1%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 47.0 3.58e-01 79.7% 50.7%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.63 47.0 4.06e-01 81.2% 66.3%
1xzpB00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.63 43.0 3.42e-01 70.3% 74.8%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 44.0 3.96e-01 73.4% 74.4%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 44.0 2.75e-01 73.4% 21.0%
4ywrA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.63 52.0 3.68e-01 98.4% 79.4%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 48.0 3.75e-01 85.9% 85.1%
7d27A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.62 53.0 3.67e-01 100.0% 46.5%
2h2yA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 47.0 3.95e-01 85.9% 85.3%
1x23B00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 46.0 3.59e-01 84.4% 79.6%
2f4wB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 48.0 3.73e-01 89.1% 68.4%
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 43.0 3.94e-01 75.0% 67.1%
3gf8A02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 46.0 3.69e-01 81.2% 74.6%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 41.0 3.58e-01 70.3% 48.0%
4r62A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 45.0 3.58e-01 84.4% 81.2%
3a46A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.60 42.0 3.30e-01 71.9% 58.8%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 48.0 3.75e-01 85.9% 80.7%
1x47A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 46.0 4.22e-01 85.9% 78.2%
1zuoB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 46.0 3.73e-01 89.1% 80.0%
7ahfA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.59 44.0 3.55e-01 85.9% 82.9%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 41.0 2.64e-01 73.4% 21.8%
2dsyD00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 46.0 4.34e-01 89.1% 72.8%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.61e-01 82.8% 55.7%
1jlxA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 44.0 3.44e-01 87.5% 78.6%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.70e-01 76.6% 91.3%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.56 41.0 3.76e-01 95.3% 57.1%
1gxrA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.75e-01 84.4% 82.1%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.61e-01 85.9% 65.9%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 44.0 3.75e-01 89.1% 64.6%
4lg8A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.88e-01 89.1% 72.9%
1loxA01 1.20.245.10 Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 0.55 48.0 2.97e-01 100.0% 36.7%
1l5jA02 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.55 41.0 2.89e-01 79.7% 71.0%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.32e-01 76.6% 77.2%
2zyzB02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.54 37.0 3.30e-01 71.9% 84.2%
3hdoA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 48.0 3.79e-01 100.0% 64.6%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.03e-01 84.4% 78.0%
1es6A02 2.60.510.10 Mainly Beta › Sandwich › EV matrix protein fold › EV matrix protein 0.53 36.0 3.20e-01 71.9% 58.6%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.83e-01 100.0% 90.2%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.46e-01 89.1% 93.6%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.38e-01 85.9% 38.6%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 36.0 3.29e-01 78.1% 70.3%
2ostD00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.50 37.0 3.07e-01 84.4% 82.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945596 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.80 53.0 6.13e-01 70.3% 97.8%
3939443 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.69 55.0 4.57e-01 85.9% 93.6%
3607863 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 55.0 4.93e-01 90.6% 76.8%
3990109 2484.1.1.102 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.68 47.0 3.75e-01 73.4% 40.7%
3727720 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.66 53.0 4.01e-01 90.6% 77.6%
2878219 5.1.11.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.66 47.0 2.87e-01 76.6% 16.4%
3382432 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.65 46.0 2.91e-01 75.0% 21.2%
3236050 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.64 52.0 4.42e-01 90.6% 100.0%
3606615 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.64 49.0 4.44e-01 84.4% 82.2%
3720304 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 42.0 4.59e-01 81.2% 88.0%
3594326 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.63 45.0 4.24e-01 78.1% 81.2%
4945220 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 45.0 3.69e-01 79.7% 79.2%
3476563 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 3.95e-01 87.5% 80.0%
3560565 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.61 42.0 2.97e-01 73.4% 46.7%
4618205 604.1.1.150 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.60 39.0 3.14e-01 90.6% 35.0%
5067597 2008.4.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › TBP-interacting protein N-terminal domain-like › TBP-interacting protein N-terminal domain-like 0.60 44.0 3.75e-01 79.7% 81.8%
3847019 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 42.0 2.64e-01 73.4% 19.7%
3188595 708.1.2.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.60 41.0 2.97e-01 70.3% 26.7%
4971490 2008.4.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › TBP-interacting protein N-terminal domain-like › TBP-interacting protein N-terminal domain-like 0.59 43.0 3.69e-01 79.7% 82.7%
3695033 3409.1.1.3 a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 0.59 47.0 3.60e-01 89.1% 98.1%
4053762 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 43.0 3.58e-01 79.7% 78.3%
3781230 1013.1.1.1 beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › DUF3337 0.59 43.0 3.00e-01 78.1% 27.6%
3300134 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 38.0 4.30e-01 71.9% 95.6%
5032068 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.58 42.0 3.75e-01 78.1% 95.8%
3916384 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.58 43.0 3.47e-01 81.2% 83.1%
3616382 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 40.0 4.11e-01 76.6% 78.3%
5037144 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 42.0 3.45e-01 79.7% 75.8%
3261192 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 41.0 3.44e-01 78.1% 77.5%
4179803 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.57 44.0 3.23e-01 89.1% 29.0%
5023070 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.57 41.0 3.31e-01 79.7% 71.9%
5031046 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 41.0 3.59e-01 79.7% 86.4%
3271679 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.36e-01 82.8% 73.8%
3244701 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 47.0 3.38e-01 92.2% 55.0%
3177251 216.1.1.41 a+b two layers › UBC-like › UBC-like › UBC-like › PF29959 0.56 39.0 3.11e-01 78.1% 59.4%
3270570 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 40.0 3.41e-01 78.1% 85.2%
4932918 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 41.0 3.72e-01 82.8% 71.6%
5013117 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 4.14e-01 81.2% 96.9%
3798433 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 2.81e-01 93.8% 63.1%
None 0.54 46.0 2.89e-01 96.9% 17.6%
3906179 4099.1.1.9 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med27 0.54 39.0 3.12e-01 81.2% 67.7%
4588058 314.1.1.3 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.54 44.0 2.88e-01 89.1% 97.8%
3597004 220.1.1.26 beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.54 38.0 3.07e-01 75.0% 42.2%
3733331 708.1.2.10 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › HECT_2 0.54 43.0 3.55e-01 87.5% 66.1%
3271365 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 45.0 2.83e-01 95.3% 77.7%
None 0.54 36.0 2.39e-01 71.9% 26.2%
3967106 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.53 47.0 3.20e-01 100.0% 86.4%
3611344 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 38.0 3.31e-01 79.7% 71.8%
3923391 10.12.1.44 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD 0.52 39.0 2.68e-01 81.2% 87.9%
3787121 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.52 41.0 3.39e-01 89.1% 84.8%
4958464 2008.1.1.205 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26915 0.52 36.0 3.02e-01 73.4% 77.5%
5010590 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 37.0 3.23e-01 78.1% 86.7%
5052825 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.51 38.0 3.38e-01 85.9% 80.0%
4640808 136.1.1.1 alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase 0.51 42.0 2.36e-01 90.6% 12.3%
3190457 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.51 41.0 2.91e-01 89.1% 97.5%
3056282 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.51 40.0 2.72e-01 92.2% 64.7%
4070395 1.1.1.28 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.50 39.0 2.42e-01 84.4% 26.5%
3791231 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 40.0 3.44e-01 96.9% 85.0%
4017263 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.50 34.0 3.08e-01 71.9% 48.4%
3699097 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 36.0 3.26e-01 81.2% 94.0%