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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00018
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00018
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 9-79
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00487__D14-69
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g8sB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.66 | 56.0 | 3.57e-01 | 93.0% | 51.9% |
| 3tu3B01 | 3.30.720.80 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.64 | 42.0 | 4.10e-01 | 78.9% | 61.8% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 42.0 | 4.40e-01 | 80.3% | 74.2% |
| 6qk7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 53.0 | 3.46e-01 | 94.4% | 39.3% |
| 4ftxB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.63 | 55.0 | 4.56e-01 | 98.6% | 56.2% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.63 | 43.0 | 3.56e-01 | 70.4% | 41.7% |
| 2rsmA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 46.0 | 3.95e-01 | 80.3% | 60.0% |
| 2bklA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.62 | 53.0 | 3.42e-01 | 97.2% | 35.2% |
| 4l1nA00 | 2.40.128.660 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 | 0.61 | 49.0 | 3.80e-01 | 88.7% | 57.8% |
| 4q28A00 | 3.30.160.780 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 46.0 | 4.03e-01 | 84.5% | 96.4% |
| 1h6lA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.59 | 50.0 | 3.27e-01 | 98.6% | 43.9% |
| 1yw5A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.59 | 33.0 | 3.45e-01 | 84.5% | 58.7% |
| 2ky6A00 | 2.40.290.30 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › Mediator complex subunit 25, ACID domain | 0.59 | 44.0 | 3.40e-01 | 80.3% | 80.7% |
| 3p54A02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.59 | 46.0 | 4.68e-01 | 87.3% | 97.2% |
| 6epkA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.59 | 47.0 | 4.71e-01 | 88.7% | 98.6% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 44.0 | 3.96e-01 | 84.5% | 59.0% |
| 2yt4A03 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 44.0 | 3.93e-01 | 84.5% | 56.7% |
| 4cc9A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 50.0 | 3.33e-01 | 98.6% | 36.8% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.58 | 48.0 | 3.87e-01 | 91.5% | 85.7% |
| 2xzhA00 | 2.130.10.110 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain | 0.58 | 50.0 | 3.24e-01 | 100.0% | 35.5% |
| 2f4wB00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.58 | 48.0 | 3.93e-01 | 100.0% | 59.9% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.58 | 41.0 | 4.42e-01 | 98.6% | 93.0% |
| 1tw0A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 39.0 | 3.10e-01 | 71.8% | 51.0% |
| 2konA00 | 3.30.160.350 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 50.0 | 4.77e-01 | 98.6% | 87.8% |
| 3nybA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.57 | 36.0 | 3.14e-01 | 98.6% | 40.0% |
| 2zwaA02 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.56 | 48.0 | 3.16e-01 | 98.6% | 44.0% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.56 | 47.0 | 3.31e-01 | 97.2% | 79.2% |
| 1uuzB00 | 3.40.1420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme | 0.55 | 45.0 | 3.75e-01 | 91.5% | 89.1% |
| 3rioA01 | 2.30.24.10 | Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain | 0.55 | 41.0 | 4.25e-01 | 80.3% | 92.6% |
| 2kvaA01 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.54 | 42.0 | 3.52e-01 | 90.1% | 87.9% |
| 5iroD00 | 2.60.40.3530 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 38.0 | 3.39e-01 | 77.5% | 64.7% |
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 33.0 | 3.18e-01 | 76.1% | 57.5% |
| 2fgeA01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 40.0 | 2.83e-01 | 88.7% | 97.6% |
| 4qi3A00 | 2.60.40.1210 | Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain | 0.51 | 42.0 | 3.09e-01 | 95.8% | 55.1% |
| 1nj1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.50 | 42.0 | 3.77e-01 | 95.8% | 93.3% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5079258 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.78 | 46.0 | 5.70e-01 | 73.2% | 95.6% |
| 4959886 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.69 | 47.0 | 5.22e-01 | 80.3% | 90.9% |
| 4969162 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.69 | 45.0 | 4.80e-01 | 80.3% | 80.0% |
| 5015133 | 4100.1.1.9 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 | 0.68 | 44.0 | 4.72e-01 | 84.5% | 78.3% |
| 4338527 | 5.1.5.145 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › eIF2A | 0.67 | 59.0 | 3.61e-01 | 100.0% | 26.3% |
| 4482319 | 5.1.11.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A | 0.66 | 59.0 | 3.56e-01 | 100.0% | 24.7% |
| 3676609 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.66 | 52.0 | 3.44e-01 | 87.3% | 44.6% |
| 4959885 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.66 | 53.0 | 5.00e-01 | 88.7% | 82.4% |
| 3581100 | 5.1.3.170 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_IFT140_2nd | 0.65 | 54.0 | 3.79e-01 | 91.5% | 79.6% |
| 4965851 | 4100.1.1.9 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 | 0.65 | 41.0 | 4.51e-01 | 73.2% | 81.8% |
| 3648313 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.65 | 55.0 | 3.59e-01 | 95.8% | 36.8% |
| 4942581 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.65 | 54.0 | 3.44e-01 | 93.0% | 35.8% |
| 3264545 | 5.1.3.117 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 | 0.64 | 52.0 | 3.33e-01 | 91.5% | 36.0% |
| 2321284 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.64 | 53.0 | 4.53e-01 | 91.5% | 67.5% |
| 3514660 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.62 | 47.0 | 4.43e-01 | 84.5% | 71.1% |
| 3709430 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 53.0 | 3.33e-01 | 95.8% | 31.8% |
| 3606531 | 5.1.3.117 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 | 0.61 | 50.0 | 3.19e-01 | 91.5% | 55.5% |
| 4027492 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 52.0 | 3.48e-01 | 94.4% | 47.0% |
| 3449246 | 5.1.3.54 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 | 0.61 | 52.0 | 3.85e-01 | 98.6% | 80.3% |
| 4969758 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.60 | 49.0 | 4.61e-01 | 93.0% | 75.6% |
| 3823559 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.60 | 48.0 | 3.20e-01 | 88.7% | 44.5% |
| 3294086 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.60 | 51.0 | 3.22e-01 | 95.8% | 30.3% |
| 4426077 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.60 | 47.0 | 3.79e-01 | 90.1% | 79.4% |
| 3937328 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.60 | 45.0 | 2.92e-01 | 81.7% | 37.5% |
| 4029617 | 5.1.11.39 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DUF7899 | 0.59 | 51.0 | 3.16e-01 | 100.0% | 28.5% |
| 3831707 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.59 | 49.0 | 3.14e-01 | 91.5% | 40.6% |
| 3640969 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.59 | 47.0 | 3.13e-01 | 91.5% | 35.4% |
| 3309658 | 5.1.4.44 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1_2 | 0.58 | 50.0 | 3.29e-01 | 100.0% | 30.3% |
| 3380385 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.58 | 47.0 | 3.14e-01 | 91.5% | 41.0% |
| 4317534 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.58 | 49.0 | 3.39e-01 | 94.4% | 34.8% |
| 4880797 | 60.1.1.2 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › Med25 | 0.58 | 45.0 | 3.68e-01 | 84.5% | 91.2% |
| 4012542 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.58 | 44.0 | 2.91e-01 | 83.1% | 50.2% |
| 3833269 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.57 | 46.0 | 3.09e-01 | 91.5% | 42.3% |
| 3330462 | 331.3.1.1 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 | 0.57 | 39.0 | 3.09e-01 | 71.8% | 50.6% |
| 3422280 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.56 | 47.0 | 4.11e-01 | 93.0% | 87.2% |
| 3965976 | 809.1.1.1 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA | 0.56 | 47.0 | 4.33e-01 | 94.4% | 70.2% |
| 3823160 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.54 | 45.0 | 2.96e-01 | 95.8% | 41.6% |
| 3295291 | 4286.1.1.1 ↗ | beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 | 0.54 | 39.0 | 3.43e-01 | 80.3% | 73.0% |
| 3419538 | 5.3.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop | 0.53 | 40.0 | 3.24e-01 | 90.1% | 41.4% |
| 4972587 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.53 | 44.0 | 3.51e-01 | 98.6% | 71.2% |
| 4976139 | 3209.1.1.0 ↗ | a+b two layers › RPL28 › RPL28 › RPL28 | 0.52 | 41.0 | 3.30e-01 | 85.9% | 49.0% |
| 3582712 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 42.0 | 3.67e-01 | 87.3% | 73.3% |
| 4001955 | 5.1.3.165 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_3, Kelch_KLHDC2_KLHL20_DRC7 | 0.52 | 44.0 | 2.96e-01 | 100.0% | 47.7% |
| 3476907 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 42.0 | 2.75e-01 | 88.7% | 35.0% |
| 3931577 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 39.0 | 2.65e-01 | 81.7% | 32.5% |
| 3336415 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.52 | 43.0 | 2.94e-01 | 100.0% | 38.4% |
| 3900096 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.51 | 43.0 | 2.84e-01 | 93.0% | 31.0% |
| 4355868 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.50 | 41.0 | 3.08e-01 | 93.0% | 81.5% |
| 3744042 | 216.1.1.27 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › HGTP_anticodon2 | 0.50 | 42.0 | 3.42e-01 | 95.8% | 68.3% |