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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00019
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00019
Identity
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 44-110
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.62 | 48.0 | 4.12e-01 | 85.1% | 84.7% |
| 2d9wA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 51.0 | 4.37e-01 | 100.0% | 93.6% |
| 4ec6A00 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 37.0 | 3.26e-01 | 82.1% | 40.4% |
| 3kztA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 36.0 | 2.99e-01 | 86.6% | 32.6% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 45.0 | 3.53e-01 | 88.1% | 54.1% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 41.0 | 3.43e-01 | 77.6% | 83.8% |
| 3obqA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 41.0 | 3.31e-01 | 82.1% | 48.9% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 46.0 | 4.51e-01 | 94.0% | 87.5% |
| 3b7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 37.0 | 3.13e-01 | 80.6% | 39.2% |
| 2fhdA02 | 2.30.30.810 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 46.0 | 4.56e-01 | 100.0% | 100.0% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 44.0 | 4.55e-01 | 98.5% | 93.8% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 41.0 | 3.48e-01 | 88.1% | 98.5% |
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.54 | 37.0 | 3.65e-01 | 71.6% | 78.9% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 41.0 | 3.62e-01 | 94.0% | 55.6% |
| 4zciA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 42.0 | 3.72e-01 | 92.5% | 60.4% |
| 2jq5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 36.0 | 3.00e-01 | 94.0% | 38.3% |
| 4d47A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 40.0 | 2.47e-01 | 83.6% | 81.0% |
| 1hpgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 41.0 | 3.63e-01 | 95.5% | 59.6% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 41.0 | 4.10e-01 | 98.5% | 86.1% |
| 1boqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 42.0 | 3.68e-01 | 94.0% | 82.2% |
| 4rlcA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 43.0 | 3.51e-01 | 98.5% | 97.0% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.50 | 41.0 | 3.11e-01 | 94.0% | 86.0% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.50 | 38.0 | 3.16e-01 | 83.6% | 86.3% |
| 3ub1D02 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 39.0 | 3.40e-01 | 89.6% | 100.0% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4546371 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.68 | 55.0 | 4.60e-01 | 91.0% | 85.8% |
| 3891434 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.68 | 51.0 | 4.05e-01 | 82.1% | 52.9% |
| 3634173 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.67 | 50.0 | 3.88e-01 | 82.1% | 47.1% |
| 3913149 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.67 | 50.0 | 3.93e-01 | 82.1% | 48.7% |
| 5016315 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.66 | 55.0 | 4.62e-01 | 97.0% | 87.2% |
| 3347601 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.66 | 49.0 | 3.85e-01 | 82.1% | 47.7% |
| 3892129 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.66 | 49.0 | 3.95e-01 | 82.1% | 52.1% |
| 3490141 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.66 | 49.0 | 3.90e-01 | 82.1% | 50.3% |
| 3625971 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.65 | 48.0 | 3.85e-01 | 82.1% | 50.3% |
| 3305808 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.63 | 51.0 | 3.01e-01 | 91.0% | 86.4% |
| 3718687 | 220.1.1.175 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_31 | 0.63 | 54.0 | 4.26e-01 | 100.0% | 80.7% |
| 3834362 | 3832.1.1.2 ↗ | alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › PF25968 | 0.62 | 50.0 | 2.98e-01 | 89.6% | 100.0% |
| 5032539 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 46.0 | 4.65e-01 | 82.1% | 98.5% |
| 4045121 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.61 | 42.0 | 4.03e-01 | 80.6% | 61.3% |
| 3989031 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.60 | 41.0 | 2.77e-01 | 70.1% | 28.8% |
| 3588750 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.60 | 40.0 | 3.93e-01 | 80.6% | 62.7% |
| 5030377 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.59 | 42.0 | 3.48e-01 | 77.6% | 90.0% |
| 3212189 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.59 | 49.0 | 4.15e-01 | 94.0% | 73.9% |
| 4998648 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.59 | 43.0 | 3.90e-01 | 80.6% | 93.7% |
| 3256053 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.58 | 47.0 | 4.27e-01 | 92.5% | 66.7% |
| 3942790 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.57 | 39.0 | 3.99e-01 | 79.1% | 73.8% |
| 4993449 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.57 | 41.0 | 3.56e-01 | 82.1% | 48.6% |
| 3925865 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.57 | 40.0 | 3.37e-01 | 74.6% | 56.7% |
| 3832543 | 7516.1.1.41 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glucan_synthase | 0.57 | 50.0 | 2.80e-01 | 100.0% | 32.4% |
| 3730835 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.57 | 44.0 | 4.06e-01 | 92.5% | 63.2% |
| 4097328 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.57 | 43.0 | 3.51e-01 | 82.1% | 44.8% |
| 3214289 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.57 | 40.0 | 3.48e-01 | 77.6% | 80.0% |
| 5028105 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.56 | 42.0 | 3.45e-01 | 82.1% | 43.7% |
| 4990259 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.56 | 45.0 | 3.66e-01 | 88.1% | 60.8% |
| 3915626 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 38.0 | 3.41e-01 | 71.6% | 75.8% |
| 4020096 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.55 | 46.0 | 3.62e-01 | 92.5% | 55.0% |
| 3458138 | 375.1.1.131 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF702 | 0.55 | 40.0 | 4.09e-01 | 80.6% | 98.5% |
| 4983267 | 2004.1.1.94 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 | 0.55 | 40.0 | 3.06e-01 | 80.6% | 74.9% |
| 3751411 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.55 | 39.0 | 3.63e-01 | 77.6% | 64.4% |
| 4082864 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.55 | 36.0 | 3.10e-01 | 83.6% | 42.9% |
| 5055744 | 5.1.3.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotran_2 | 0.54 | 45.0 | 2.96e-01 | 98.5% | 61.1% |
| 3789008 | 1.1.5.85 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S64 | 0.54 | 45.0 | 3.02e-01 | 100.0% | 85.7% |
| 4436162 | 243.1.1.34 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like | 0.54 | 36.0 | 2.97e-01 | 80.6% | 35.4% |
| 4623792 | 243.1.1.34 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like | 0.54 | 36.0 | 3.06e-01 | 80.6% | 37.6% |
| 3198252 | 1.1.17.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 | 0.54 | 46.0 | 3.50e-01 | 100.0% | 50.0% |
| 3617912 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.54 | 46.0 | 3.77e-01 | 94.0% | 80.0% |
| 3513698 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.53 | 38.0 | 2.76e-01 | 76.1% | 77.6% |
| 4959068 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.53 | 32.0 | 2.09e-01 | 86.6% | 12.7% |
| 3550699 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.53 | 41.0 | 3.78e-01 | 91.0% | 69.5% |
| 3410370 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 42.0 | 4.22e-01 | 92.5% | 90.0% |
| 3441143 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.52 | 44.0 | 3.96e-01 | 100.0% | 69.0% |
| 4485576 | 1.1.17.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 | 0.52 | 43.0 | 2.95e-01 | 100.0% | 78.6% |
| 5075281 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.51 | 39.0 | 2.60e-01 | 88.1% | 27.6% |
| 4074364 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 35.0 | 2.95e-01 | 80.6% | 38.5% |