←Back to structures
SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00029
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00029
Identity
- Kingdom:
- phage
Quality
70.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-74
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4p1mB01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.65 | 37.0 | 4.39e-01 | 78.6% | 86.7% |
| 4jhyA00 | 3.30.530.80 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.61 | 48.0 | 3.78e-01 | 88.6% | 100.0% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.59 | 50.0 | 3.21e-01 | 98.6% | 98.4% |
| 4ddpA00 | 1.10.418.40 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 | 0.57 | 50.0 | 3.69e-01 | 100.0% | 88.2% |
| 3w3aG00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 40.0 | 2.92e-01 | 77.1% | 31.0% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.55 | 35.0 | 3.41e-01 | 81.4% | 57.1% |
| 3ms6A00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.54 | 35.0 | 3.25e-01 | 90.0% | 48.9% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.54 | 43.0 | 4.25e-01 | 100.0% | 85.3% |
| 2bbuA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 45.0 | 3.50e-01 | 98.6% | 90.4% |
| 1xi7A00 | 4.10.40.20 | Few Secondary Structures › Irregular › Omega-AgatoxinV › | 0.52 | 32.0 | 3.64e-01 | 80.0% | 91.5% |
| 6k34A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 39.0 | 2.55e-01 | 81.4% | 95.7% |
| 1b35B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 43.0 | 3.01e-01 | 100.0% | 52.2% |
| 4ehoB03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.50 | 42.0 | 3.28e-01 | 100.0% | 51.4% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.50 | 37.0 | 2.31e-01 | 78.6% | 32.5% |
| 4ijaA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 42.0 | 3.37e-01 | 97.1% | 71.3% |
| 2ob0C01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 37.0 | 2.84e-01 | 78.6% | 53.1% |
| 2rftA02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.50 | 43.0 | 3.04e-01 | 100.0% | 40.2% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3998727 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.62 | 38.0 | 3.25e-01 | 78.6% | 37.4% |
| 1278602 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.61 | 37.0 | 3.96e-01 | 70.0% | 71.7% |
| 4371980 | 2005.1.1.30 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › BshC | 0.59 | 49.0 | 3.30e-01 | 98.6% | 30.2% |
| 2440220 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.59 | 36.0 | 3.87e-01 | 71.4% | 72.9% |
| 3957084 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.59 | 36.0 | 3.51e-01 | 71.4% | 53.8% |
| 2760247 | 210.1.6.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept | 0.58 | 51.0 | 3.28e-01 | 98.6% | 25.1% |
| 3346618 | 7519.1.1.1 ↗ | a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt | 0.58 | 50.0 | 3.31e-01 | 100.0% | 48.9% |
| 4933528 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.58 | 40.0 | 2.89e-01 | 72.9% | 30.0% |
| 4943172 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.57 | 40.0 | 2.91e-01 | 72.9% | 33.0% |
| None | — | 0.57 | 49.0 | 3.42e-01 | 100.0% | 28.2% | |
| None | — | 0.56 | 48.0 | 3.29e-01 | 100.0% | 72.4% | |
| 3413213 | 3338.2.1.0 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB | 0.55 | 47.0 | 3.94e-01 | 98.6% | 86.7% |
| 4181633 | 2005.1.1.30 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › BshC | 0.55 | 45.0 | 3.07e-01 | 98.6% | 29.5% |
| 1069582 | 210.1.6.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept | 0.55 | 44.0 | 3.04e-01 | 92.9% | 23.2% |
| 1697374 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.55 | 35.0 | 3.93e-01 | 70.0% | 87.0% |
| 4065501 | 2005.1.1.30 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › BshC | 0.55 | 45.0 | 3.02e-01 | 98.6% | 28.9% |
| 3423625 | 109.4.1.1371 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif, E_motif | 0.53 | 41.0 | 2.45e-01 | 84.3% | 23.0% |
| 3187032 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.53 | 36.0 | 2.59e-01 | 70.0% | 29.8% |
| 5056727 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.52 | 36.0 | 2.65e-01 | 72.9% | 30.2% |
| 3207096 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.52 | 35.0 | 2.48e-01 | 70.0% | 26.5% |
| 4961983 | 3755.1.1.32 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › ATP-synt_D | 0.52 | 38.0 | 2.69e-01 | 78.6% | 29.6% |
| 3241311 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 41.0 | 3.04e-01 | 97.1% | 32.6% |
| None | — | 0.51 | 42.0 | 2.97e-01 | 100.0% | 46.5% | |
| 3331615 | 7579.1.1.124 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH, Hydrolase_4 | 0.50 | 42.0 | 2.93e-01 | 100.0% | 46.5% |
| 1543668 | 2003.1.2.21 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Trp_halogenase | 0.50 | 34.0 | 2.56e-01 | 70.0% | 63.6% |