←Back to structures
SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00054
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00054
Identity
- Kingdom:
- phage
Quality
92.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-86
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.74 | 52.0 | 4.81e-01 | 81.5% | 58.4% |
| 2afaA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.71 | 50.0 | 3.11e-01 | 72.8% | 19.6% |
| 2cfqA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.68 | 52.0 | 3.92e-01 | 82.7% | 77.6% |
| 1e3pA02 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.67 | 52.0 | 5.17e-01 | 84.0% | 96.4% |
| 4a5dB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.66 | 53.0 | 3.84e-01 | 87.7% | 40.5% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.65 | 45.0 | 3.85e-01 | 72.8% | 42.8% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 40.0 | 4.31e-01 | 72.8% | 74.6% |
| 5nx5B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 47.0 | 3.28e-01 | 85.2% | 38.0% |
| 3vw7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.60 | 46.0 | 3.17e-01 | 82.7% | 41.1% |
| 2aamC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 44.0 | 3.02e-01 | 79.0% | 29.4% |
| 6adqB01 | 1.20.810.10 | Mainly Alpha › Up-down Bundle › Cytochrome Bc1 Complex; Chain C › Cytochrome Bc1 Complex; Chain C | 0.59 | 47.0 | 2.92e-01 | 85.2% | 41.5% |
| 2vxgA02 | 1.10.220.100 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 | 0.58 | 40.0 | 3.98e-01 | 70.4% | 67.1% |
| 3ktdD02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.58 | 47.0 | 4.33e-01 | 90.1% | 78.9% |
| 4c0eA01 | 1.25.40.790 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 44.0 | 3.08e-01 | 82.7% | 24.0% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.56 | 42.0 | 3.26e-01 | 80.2% | 37.8% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.55 | 44.0 | 2.89e-01 | 86.4% | 46.7% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.52 | 37.0 | 3.84e-01 | 81.5% | 83.8% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3428209 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.75 | 62.0 | 4.54e-01 | 91.4% | 73.2% |
| 3272819 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.75 | 51.0 | 4.60e-01 | 76.5% | 51.8% |
| 5026719 | 613.1.1.1 ↗ | alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c | 0.74 | 56.0 | 4.06e-01 | 88.9% | 29.5% |
| 3639520 | 219.1.1.9 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 | 0.73 | 58.0 | 3.77e-01 | 84.0% | 22.5% |
| 4973798 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.72 | 57.0 | 4.82e-01 | 85.2% | 52.6% |
| 3998879 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 62.0 | 5.47e-01 | 97.5% | 69.2% |
| 3509229 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.71 | 61.0 | 4.35e-01 | 97.5% | 65.9% |
| 4020089 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.70 | 54.0 | 4.53e-01 | 82.7% | 61.4% |
| 5055967 | 7516.1.1.189 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › MGS_GT | 0.68 | 54.0 | 3.43e-01 | 85.2% | 21.5% |
| 4042706 | 129.1.1.10 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Mannitol_dh_C | 0.68 | 50.0 | 3.85e-01 | 77.8% | 44.8% |
| 3519581 | 604.12.1.4 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1 | 0.66 | 50.0 | 4.15e-01 | 85.2% | 47.4% |
| 3687029 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.66 | 53.0 | 5.03e-01 | 87.7% | 91.6% |
| 4475578 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.64 | 48.0 | 3.24e-01 | 81.5% | 33.8% |
| 3277552 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.63 | 52.0 | 3.50e-01 | 92.6% | 36.7% |
| 3637728 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.62 | 46.0 | 4.26e-01 | 79.0% | 70.5% |
| 3736709 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.62 | 56.0 | 4.07e-01 | 100.0% | 58.2% |
| 3259759 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.61 | 50.0 | 3.39e-01 | 95.1% | 36.8% |
| 3254905 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.59 | 47.0 | 3.17e-01 | 90.1% | 37.4% |
| 3641055 | 109.4.1.436 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nipped-B_C | 0.58 | 49.0 | 3.47e-01 | 100.0% | 29.4% |
| 4021855 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.57 | 44.0 | 2.74e-01 | 85.2% | 16.6% |
| 3813779 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.56 | 50.0 | 3.48e-01 | 100.0% | 70.4% |
| 4484289 | 633.23.1.9 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 | 0.54 | 47.0 | 3.60e-01 | 97.5% | 44.2% |