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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00066

Bact-Vir

SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00066

Identity

Kingdom:
phage

Quality

91.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-94
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a46A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.67 47.0 4.07e-01 73.6% 91.9%
1k8kD02 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.64 44.0 3.83e-01 70.1% 74.0%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 48.0 3.18e-01 81.6% 78.3%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 51.0 3.50e-01 98.9% 43.5%
3akhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 50.0 3.51e-01 96.6% 62.6%
2rk0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 39.0 3.49e-01 89.7% 47.9%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.28e-01 100.0% 59.5%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 45.0 3.11e-01 82.8% 34.4%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 50.0 3.19e-01 98.9% 56.7%
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 49.0 3.16e-01 100.0% 46.1%
3rr1A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 40.0 3.49e-01 72.4% 51.8%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 51.0 3.34e-01 100.0% 92.2%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 49.0 3.14e-01 98.9% 46.2%
4wnoA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 42.0 4.22e-01 88.5% 79.3%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 41.0 3.17e-01 80.5% 34.1%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.55 48.0 3.35e-01 98.9% 37.7%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 38.0 3.58e-01 74.7% 61.7%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.54 43.0 4.19e-01 83.9% 85.1%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.54 41.0 3.37e-01 81.6% 68.1%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.54 47.0 3.93e-01 100.0% 91.9%
1wuoA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 43.0 3.21e-01 85.1% 93.2%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 3.38e-01 77.0% 83.0%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 35.0 3.55e-01 73.6% 64.4%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 37.0 3.50e-01 72.4% 100.0%
4k35A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.52 42.0 3.25e-01 88.5% 91.7%
2prvA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.52 38.0 3.19e-01 96.6% 43.8%
2jjdF02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 47.0 3.35e-01 100.0% 41.6%
2i7tA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 45.0 3.31e-01 100.0% 67.3%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.49e-01 82.8% 87.9%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 43.0 3.63e-01 92.0% 72.0%
2ppqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 38.0 3.78e-01 100.0% 73.4%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.55e-01 88.5% 62.8%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 42.0 2.96e-01 93.1% 48.9%
3a4yA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 45.0 3.27e-01 98.9% 71.9%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 38.0 3.29e-01 82.8% 64.4%
4mmhA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 42.0 3.05e-01 95.4% 41.9%
7jvhC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 3.02e-01 100.0% 51.7%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 45.0 3.15e-01 98.9% 46.1%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.97e-01 87.4% 81.6%
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 35.0 3.61e-01 77.0% 74.1%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266531 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.67 47.0 3.76e-01 79.3% 38.2%
145646 3504.2.1.1 beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.67 47.0 4.09e-01 73.6% 94.0%
3279800 881.1.1.15 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.65 50.0 4.18e-01 81.6% 54.4%
3208232 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.64 51.0 3.17e-01 86.2% 63.2%
3850090 4099.1.1.19 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM8 0.64 39.0 3.32e-01 93.1% 38.4%
3760199 331.2.1.6 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › Med14_RM8 0.64 39.0 3.73e-01 93.1% 53.0%
3579354 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 55.0 5.09e-01 94.3% 87.3%
3481353 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 55.0 3.71e-01 98.9% 44.6%
3491951 5.1.4.220 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.62 55.0 3.70e-01 98.9% 44.0%
4540629 5.1.3.179 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Sortilin-Vps10 0.61 54.0 3.05e-01 97.7% 14.6%
4940667 881.3.1.0 a+b three layers › Mog1p/PsbP-like › Outer membrane-associated lipoprotein TP0453 › Outer membrane-associated lipoprotein TP0453 0.61 47.0 3.28e-01 87.4% 24.5%
4218441 5.1.7.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR, Sortilin-Vps10 0.60 54.0 3.05e-01 100.0% 18.3%
4486641 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.60 54.0 3.04e-01 100.0% 18.0%
3703790 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.60 51.0 3.28e-01 95.4% 55.8%
3713198 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.60 51.0 4.20e-01 95.4% 52.3%
1891431 9.1.1.28 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Pallilysin 0.59 47.0 4.13e-01 83.9% 72.8%
3620049 5.1.4.220 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.59 53.0 3.65e-01 98.9% 57.7%
5040847 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 54.0 3.69e-01 100.0% 40.3%
3459823 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 52.0 3.70e-01 100.0% 40.0%
3823073 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 53.0 3.52e-01 100.0% 38.9%
3175538 5.1.4.258 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.59 51.0 3.33e-01 100.0% 38.6%
3973387 5.1.5.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF3686 0.59 45.0 3.08e-01 81.6% 33.9%
3434838 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 51.0 3.54e-01 98.9% 50.2%
4104221 5.1.7.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR, Sortilin-Vps10 0.58 49.0 3.15e-01 97.7% 80.6%
3387201 5.1.3.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.58 51.0 3.48e-01 96.6% 36.4%
4944053 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 40.0 4.25e-01 79.3% 81.3%
3723122 5.1.2.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF4185 0.58 48.0 3.34e-01 96.6% 64.5%
5003221 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.58 40.0 3.67e-01 71.3% 82.6%
4099513 5.1.4.307 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.57 51.0 3.21e-01 98.9% 49.8%
3409750 5.1.4.219 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.57 50.0 3.15e-01 98.9% 46.9%
4366777 5.1.5.205 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF27482 0.56 48.0 3.16e-01 93.1% 35.3%
3785599 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 48.0 3.21e-01 93.1% 72.9%
5037132 2.1.1.127 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.56 39.0 3.35e-01 70.1% 59.0%
3853147 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.56 50.0 3.35e-01 100.0% 61.1%
5055252 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.56 48.0 3.34e-01 98.9% 43.1%
3204828 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 49.0 2.89e-01 97.7% 19.1%
3816742 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 48.0 3.34e-01 100.0% 43.7%
4321106 5.1.4.307 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.56 49.0 3.22e-01 98.9% 47.7%
4526577 5.1.3.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.55 47.0 3.33e-01 93.1% 40.0%
5021135 2.1.1.24 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.55 37.0 3.74e-01 70.1% 71.1%
3701230 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.55 46.0 3.05e-01 97.7% 51.3%
3421095 3521.1.1.4 a+b three layers › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › SWIM 0.55 38.0 3.77e-01 71.3% 84.4%
4324527 5.1.5.213 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF29037 0.55 48.0 3.10e-01 98.9% 49.6%
3605584 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.64e-01 81.6% 65.9%
3516693 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 46.0 4.19e-01 92.0% 80.9%
3492330 5.1.4.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.54 48.0 3.17e-01 98.9% 54.9%
3499149 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 48.0 3.07e-01 98.9% 47.4%
4957480 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.54 47.0 3.12e-01 98.9% 27.9%
4586501 5.1.4.307 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.54 48.0 3.04e-01 98.9% 55.8%
3623313 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.53 45.0 3.13e-01 100.0% 49.6%
3274499 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 2.87e-01 100.0% 22.7%
3280045 5.1.4.221 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SGL 0.53 45.0 3.14e-01 95.4% 41.7%
3935261 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.52 47.0 3.13e-01 100.0% 40.2%
3720183 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 40.0 3.20e-01 82.8% 72.2%
3363301 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.52 46.0 3.12e-01 98.9% 39.1%
3177293 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.52 41.0 3.66e-01 85.1% 72.8%
3516397 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.52 41.0 3.22e-01 85.1% 55.1%
3436240 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.52 43.0 3.03e-01 96.6% 37.1%
4028474 247.1.1.44 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, RMMBL, Lactamase_B_6 0.52 45.0 3.02e-01 100.0% 64.1%
4948154 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 3.47e-01 80.5% 71.2%
3706311 247.1.1.8 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › RMMBL,Lactamase_B_6 0.51 45.0 3.40e-01 98.9% 57.7%
3269530 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.51 42.0 3.46e-01 94.3% 61.1%
4979416 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 44.0 2.78e-01 97.7% 41.8%