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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00098
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00098
Identity
- Kingdom:
- phage
Quality
92.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-144
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2owpA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 36.0 | 3.54e-01 | 72.9% | 48.8% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.62 | 39.0 | 3.63e-01 | 86.4% | 49.7% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.60 | 45.0 | 3.95e-01 | 83.1% | 52.9% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.60 | 44.0 | 4.12e-01 | 83.9% | 61.9% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.60 | 45.0 | 4.20e-01 | 83.9% | 64.1% |
| 1dwnA00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.58 | 41.0 | 4.06e-01 | 76.3% | 67.7% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.56 | 37.0 | 3.74e-01 | 70.3% | 65.9% |
| 4aipC02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.55 | 38.0 | 2.46e-01 | 71.2% | 24.2% |
| 1i78B00 | 2.40.128.90 | Mainly Beta › Beta Barrel › Lipocalin › OMPT-like | 0.54 | 45.0 | 3.47e-01 | 92.4% | 100.0% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.54 | 46.0 | 4.05e-01 | 94.9% | 93.9% |
| 3hzpA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 33.0 | 3.30e-01 | 84.7% | 59.8% |
| 1xksA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 41.0 | 2.88e-01 | 84.7% | 33.2% |
| 3zpmA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.51 | 43.0 | 3.54e-01 | 90.7% | 56.4% |
| 5kkuD00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.51 | 39.0 | 2.89e-01 | 78.8% | 66.2% |
| 1w7cA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 37.0 | 3.72e-01 | 75.4% | 80.3% |
| 2f1vA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.50 | 42.0 | 3.73e-01 | 93.2% | 96.2% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3398694 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.69 | 54.0 | 5.74e-01 | 97.5% | 93.3% |
| 3316409 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.67 | 50.0 | 4.05e-01 | 98.3% | 41.8% |
| 3830647 | 868.1.1.5 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 | 0.66 | 49.0 | 4.12e-01 | 98.3% | 47.2% |
| 3875809 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.63 | 45.0 | 4.08e-01 | 80.5% | 53.9% |
| 3534691 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.61 | 45.0 | 4.02e-01 | 82.2% | 54.5% |
| 4948088 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 51.0 | 4.47e-01 | 99.2% | 60.6% |
| 6689 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.61 | 52.0 | 5.15e-01 | 92.4% | 92.9% |
| 3391818 | 3070.2.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain | 0.60 | 37.0 | 4.02e-01 | 70.3% | 73.7% |
| 3056279 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.59 | 43.0 | 3.91e-01 | 81.4% | 55.2% |
| 4025435 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.58 | 43.0 | 3.73e-01 | 85.6% | 48.4% |
| 4992294 | 10.1.1.117 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin | 0.58 | 52.0 | 4.07e-01 | 98.3% | 59.2% |
| None | — | 0.58 | 52.0 | 3.19e-01 | 100.0% | 58.3% | |
| 3721524 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 37.0 | 3.57e-01 | 77.1% | 55.7% |
| 4668983 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.56 | 42.0 | 3.87e-01 | 83.9% | 60.0% |
| 4647627 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.54 | 46.0 | 3.72e-01 | 89.8% | 57.2% |
| 4260435 | 881.1.1.6 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN | 0.54 | 38.0 | 3.30e-01 | 72.9% | 53.0% |
| 2061655 | 9.2.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin | 0.54 | 43.0 | 4.10e-01 | 84.7% | 89.0% |
| 4003540 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 45.0 | 2.92e-01 | 92.4% | 81.8% |
| 3717466 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.53 | 43.0 | 3.68e-01 | 86.4% | 62.1% |
| 901 | 4252.1.1.1 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › CrtC | 0.53 | 47.0 | 4.06e-01 | 100.0% | 100.0% |
| 3300968 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 2.83e-01 | 100.0% | 59.9% |
| 3165475 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.52 | 43.0 | 3.99e-01 | 93.2% | 98.7% |
| 2491331 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 42.0 | 3.82e-01 | 89.0% | 68.9% |
| 4377115 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.51 | 43.0 | 2.54e-01 | 93.2% | 24.3% |
| 1307904 | 5084.5.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD | 0.51 | 45.0 | 3.14e-01 | 96.6% | 99.7% |
| 3944680 | 5084.5.3.7 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › BCSC_C | 0.51 | 43.0 | 3.08e-01 | 93.2% | 93.6% |
| 4937593 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.51 | 42.0 | 3.50e-01 | 91.5% | 89.9% |
| 3249097 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.50 | 43.0 | 3.06e-01 | 93.2% | 68.8% |
| 3854441 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.50 | 42.0 | 3.44e-01 | 89.8% | 61.4% |
| 4367390 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.50 | 43.0 | 2.89e-01 | 93.2% | 94.7% |
| 3196170 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 35.0 | 3.14e-01 | 98.3% | 49.7% |