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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00099

Bact-Vir

SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00099

Identity

Kingdom:
phage

Quality

72.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-93
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1usuB00 3.15.10.20 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain 0.70 61.0 5.38e-01 97.8% 86.4%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.68 58.0 4.64e-01 97.8% 88.5%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 49.0 4.46e-01 77.5% 96.7%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.67 54.0 3.68e-01 87.6% 88.6%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.65 46.0 3.13e-01 74.2% 33.8%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 47.0 4.15e-01 77.5% 93.9%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.64 52.0 4.49e-01 88.8% 62.9%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 48.0 4.31e-01 82.0% 93.8%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.63 50.0 3.50e-01 88.8% 88.7%
3nqnA00 3.30.530.70 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › Uncharacterised protein PF12723, DUF3809 0.63 53.0 4.56e-01 96.6% 82.8%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.63 45.0 2.97e-01 75.3% 22.9%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 43.0 4.00e-01 70.8% 95.5%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 43.0 2.97e-01 71.9% 29.2%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.61 48.0 4.59e-01 83.1% 85.3%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.61 47.0 4.82e-01 82.0% 86.0%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 46.0 3.14e-01 82.0% 40.6%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 53.0 4.40e-01 97.8% 78.1%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.59 48.0 3.91e-01 89.9% 91.8%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 42.0 2.91e-01 75.3% 40.1%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.58 52.0 3.90e-01 100.0% 67.0%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.58 50.0 3.77e-01 100.0% 55.2%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 50.0 4.18e-01 97.8% 88.8%
1oqwA00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.58 46.0 3.90e-01 85.4% 66.7%
3zt9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 50.0 3.94e-01 97.8% 74.0%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.56 48.0 3.34e-01 98.9% 44.6%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.56 47.0 4.51e-01 100.0% 81.7%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 35.0 3.91e-01 79.8% 87.7%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 49.0 4.05e-01 100.0% 93.6%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.54 49.0 4.22e-01 100.0% 71.2%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 46.0 4.16e-01 97.8% 70.3%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.54 45.0 3.20e-01 100.0% 59.6%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.53 45.0 4.27e-01 96.6% 95.4%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.53 43.0 3.35e-01 91.0% 41.8%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.86e-01 89.9% 38.8%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 4.00e-01 88.8% 95.2%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 43.0 4.22e-01 95.5% 80.8%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 38.0 3.45e-01 82.0% 61.4%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 38.0 3.53e-01 84.3% 88.8%
3vsmA02 2.70.98.100 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Baculovirus E66 occlusion-derived virus envelope protein, domain 2 0.51 40.0 3.26e-01 89.9% 90.1%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.51 41.0 3.46e-01 88.8% 80.4%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5074714 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.78 61.0 5.79e-01 86.5% 70.5%
4945614 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.75 60.0 4.99e-01 86.5% 65.2%
2452178 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.75 60.0 4.72e-01 86.5% 54.1%
3258377 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.75 65.0 6.50e-01 98.9% 91.1%
5033895 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.75 60.0 5.02e-01 86.5% 66.0%
5036111 213.1.1.31 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.75 60.0 4.92e-01 86.5% 62.5%
3993850 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.74 60.0 5.15e-01 86.5% 71.2%
4947911 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.74 60.0 4.97e-01 86.5% 65.4%
3592253 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.74 60.0 4.88e-01 86.5% 64.4%
5004406 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.74 59.0 5.03e-01 86.5% 66.9%
3712060 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.74 59.0 4.81e-01 86.5% 61.8%
3414638 213.1.1.72 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 0.73 59.0 4.94e-01 86.5% 66.0%
4947933 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.73 63.0 5.02e-01 94.4% 80.6%
5080820 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.73 58.0 4.75e-01 86.5% 68.5%
4452431 213.1.1.31 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.72 58.0 4.90e-01 86.5% 66.0%
4947966 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.72 62.0 5.00e-01 95.5% 78.2%
5066271 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.71 59.0 4.80e-01 91.0% 78.2%
5045707 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 51.0 5.51e-01 75.3% 98.7%
4027513 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.70 55.0 5.12e-01 94.4% 67.0%
4979282 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.70 62.0 4.92e-01 98.9% 74.4%
5045102 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.69 58.0 5.68e-01 94.4% 86.3%
4936480 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.68 60.0 4.87e-01 100.0% 77.7%
3738504 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.68 59.0 5.56e-01 98.9% 78.2%
3928054 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 47.0 3.29e-01 70.8% 37.4%
138908 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.67 49.0 4.46e-01 77.5% 96.7%
3603190 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 46.0 2.76e-01 71.9% 13.4%
3189020 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.66 54.0 3.29e-01 100.0% 14.8%
3824049 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.64 45.0 3.14e-01 71.9% 30.7%
4088781 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.64 52.0 4.18e-01 89.9% 73.3%
4123847 7579.1.1.27 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › AXE1 0.63 50.0 3.44e-01 87.6% 86.5%
5038572 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 53.0 4.50e-01 96.6% 80.7%
4490121 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.62 44.0 4.39e-01 75.3% 90.5%
3959649 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.61 50.0 3.96e-01 91.0% 70.5%
2082647 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.61 53.0 3.92e-01 100.0% 89.9%
4944259 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.61 54.0 4.02e-01 100.0% 91.9%
3303897 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.60 52.0 4.16e-01 96.6% 71.4%
840 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.59 50.0 4.00e-01 93.3% 82.3%
4015408 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.59 46.0 3.06e-01 84.3% 20.3%
4087213 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 44.0 4.72e-01 83.1% 93.3%
3258701 192.8.1.295 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Spindle_Spc25 0.58 44.0 3.33e-01 87.6% 32.3%
4991720 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.58 42.0 3.74e-01 75.3% 65.6%
4955365 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.58 34.0 2.99e-01 86.5% 38.5%
3946522 9.1.1.36 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3833 0.58 48.0 4.03e-01 92.1% 71.0%
3057485 71.1.1.10 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 0.58 44.0 3.67e-01 96.6% 46.1%
3626003 216.1.1.17 a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C 0.58 48.0 4.50e-01 94.4% 79.1%
3233362 243.3.1.35 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF229 0.57 43.0 3.85e-01 83.1% 77.0%
3508100 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.56 47.0 4.15e-01 95.5% 65.7%
3632334 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 48.0 3.16e-01 100.0% 31.8%
3678591 243.3.1.12 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.55 40.0 4.00e-01 75.3% 90.0%
3596002 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 40.0 3.65e-01 80.9% 95.4%
5018251 5.1.2.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.54 46.0 3.16e-01 94.4% 46.7%
5037639 5.1.2.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.53 43.0 2.95e-01 89.9% 83.4%
3602029 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.52 41.0 3.16e-01 83.1% 78.5%
4115972 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.52 41.0 3.57e-01 87.6% 89.7%
3736600 2003.1.1.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.52 43.0 2.96e-01 96.6% 62.5%
3789395 5.1.4.348 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st 0.51 44.0 3.06e-01 100.0% 68.1%
3446904 243.3.1.12 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.51 36.0 3.62e-01 74.2% 94.4%
4545587 5.1.3.154 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.51 43.0 2.82e-01 97.8% 91.9%
3225806 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.65e-01 87.6% 78.3%