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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00116
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00116
Identity
- Kingdom:
- phage
Quality
66.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-85
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hi0A02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.78 | 71.0 | 5.21e-01 | 100.0% | 44.8% |
| 1fafA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.71 | 60.0 | 5.82e-01 | 93.1% | 86.1% |
| 7e9uA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.69 | 56.0 | 3.37e-01 | 100.0% | 13.7% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.69 | 43.0 | 4.99e-01 | 93.1% | 91.8% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.66 | 56.0 | 4.52e-01 | 94.4% | 63.0% |
| 3w1oA00 | 3.40.1760.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › | 0.66 | 57.0 | 4.94e-01 | 100.0% | 93.0% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 50.0 | 5.29e-01 | 84.7% | 96.8% |
| 2hqyA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 44.0 | 3.40e-01 | 72.2% | 46.4% |
| 3vw5A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.63 | 50.0 | 3.20e-01 | 88.9% | 20.6% |
| 1nfvA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 53.0 | 4.08e-01 | 94.4% | 52.1% |
| 1fp3A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.63 | 55.0 | 3.43e-01 | 97.2% | 20.1% |
| 2vgxB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 51.0 | 4.05e-01 | 88.9% | 53.8% |
| 1oxjA02 | 1.25.40.170 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain | 0.61 | 46.0 | 4.03e-01 | 80.6% | 61.5% |
| 2katA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 51.0 | 4.34e-01 | 91.7% | 69.6% |
| 6nhiA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 53.0 | 3.44e-01 | 100.0% | 32.7% |
| 2c2uA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 50.0 | 3.80e-01 | 94.4% | 52.2% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 49.0 | 4.06e-01 | 93.1% | 67.4% |
| 2oy9A01 | 1.10.220.80 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › BH2638-like | 0.59 | 45.0 | 4.51e-01 | 83.3% | 90.8% |
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 50.0 | 4.08e-01 | 94.4% | 64.2% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 43.0 | 4.34e-01 | 80.6% | 78.7% |
| 1b04A03 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 41.0 | 4.33e-01 | 100.0% | 85.5% |
| 3ugjA02 | 1.10.8.750 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phosphoribosylformylglycinamidine synthase, linker domain | 0.58 | 38.0 | 4.10e-01 | 70.8% | 79.0% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 49.0 | 4.01e-01 | 94.4% | 60.2% |
| 4i5lB01 | 1.10.238.230 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.56 | 39.0 | 3.50e-01 | 70.8% | 58.0% |
| 7ekdA01 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.54 | 45.0 | 3.04e-01 | 98.6% | 38.6% |
| 3jc6D01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 40.0 | 3.18e-01 | 81.9% | 69.4% |
| 4gpkB01 | 1.25.40.1000 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 42.0 | 3.88e-01 | 88.9% | 83.8% |
| 4j8dD00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 42.0 | 3.29e-01 | 87.5% | 51.9% |
| 7el5A01 | 1.10.2000.10 | Mainly Alpha › Orthogonal Bundle › Frizzled cysteine-rich domain › Frizzled cysteine-rich domain | 0.53 | 45.0 | 3.97e-01 | 97.2% | 77.7% |
| 3q45A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 44.0 | 3.78e-01 | 100.0% | 98.4% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 135214 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.78 | 71.0 | 5.26e-01 | 100.0% | 46.3% |
| 2845073 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.75 | 67.0 | 5.09e-01 | 100.0% | 49.4% |
| 3608942 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.72 | 54.0 | 4.72e-01 | 80.6% | 59.1% |
| 3897876 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.70 | 57.0 | 4.09e-01 | 88.9% | 49.8% |
| 3492612 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.66 | 55.0 | 3.95e-01 | 91.7% | 68.1% |
| 3969202 | 601.7.1.34 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 | 0.65 | 48.0 | 4.27e-01 | 94.4% | 53.7% |
| 4362692 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.63 | 53.0 | 4.80e-01 | 94.4% | 89.0% |
| 3923922 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.63 | 48.0 | 4.80e-01 | 83.3% | 90.7% |
| 3598577 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.62 | 50.0 | 4.87e-01 | 87.5% | 91.3% |
| 4963776 | 2007.1.9.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › DUF373 | 0.62 | 55.0 | 4.50e-01 | 100.0% | 64.4% |
| 4965931 | 2007.1.2.57 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DUF373 | 0.61 | 53.0 | 4.40e-01 | 100.0% | 65.2% |
| 3727368 | 609.1.1.0 ↗ | alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase | 0.60 | 44.0 | 3.50e-01 | 77.8% | 56.0% |
| 3589993 | 4296.1.1.1 ↗ | alpha arrays › BH2638-like › BH2638-like › BH2638-like › UPF0223 | 0.59 | 46.0 | 4.45e-01 | 83.3% | 86.3% |
| 2379 | 4296.1.1.1 ↗ | alpha arrays › BH2638-like › BH2638-like › BH2638-like › UPF0223 | 0.59 | 46.0 | 4.40e-01 | 84.7% | 82.4% |
| 3517762 | 3636.1.1.3 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain › ARCH_RTEL1 | 0.59 | 49.0 | 3.79e-01 | 95.8% | 75.4% |
| 3489362 | 108.1.1.18 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_2 | 0.59 | 46.0 | 3.78e-01 | 87.5% | 62.9% |
| 3374915 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.58 | 49.0 | 4.09e-01 | 94.4% | 76.8% |
| 3627903 | 5.1.11.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_HPS5 | 0.57 | 46.0 | 2.79e-01 | 87.5% | 96.2% |
| 3480837 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.57 | 46.0 | 3.66e-01 | 94.4% | 97.0% |
| 4999212 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.56 | 45.0 | 3.24e-01 | 93.1% | 27.7% |
| 3786987 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.56 | 48.0 | 3.11e-01 | 100.0% | 41.3% |
| 3957483 | 243.1.1.77 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 | 0.56 | 42.0 | 3.50e-01 | 83.3% | 66.7% |
| 3856461 | 108.1.1.18 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_2 | 0.56 | 46.0 | 3.91e-01 | 91.7% | 60.0% |
| 3172073 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.56 | 48.0 | 3.12e-01 | 100.0% | 37.7% |
| 3824339 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 42.0 | 3.33e-01 | 84.7% | 86.1% |
| 3272690 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.54 | 48.0 | 2.88e-01 | 100.0% | 17.0% |
| 4052138 | 108.1.1.117 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › MPS2 | 0.53 | 41.0 | 3.72e-01 | 88.9% | 74.3% |
| 4042803 | 101.1.17.32 ↗ | alpha arrays › HTH › HTH › FF domain › LRR_LRWD1 | 0.53 | 41.0 | 3.96e-01 | 87.5% | 82.4% |
| 3460217 | 108.1.1.11 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › Cullin_binding | 0.52 | 38.0 | 3.55e-01 | 83.3% | 61.3% |
| 3743127 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.51 | 41.0 | 3.96e-01 | 87.5% | 78.8% |
| 3294434 | 2485.1.1.49 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_12 | 0.50 | 37.0 | 2.72e-01 | 77.8% | 42.6% |