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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00129
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00129
Identity
- Kingdom:
- phage
Quality
78.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-52
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g5jA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.86 | 61.0 | 4.23e-01 | 75.0% | 26.9% |
| 3uk6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.72 | 60.0 | 5.02e-01 | 100.0% | 66.3% |
| 3mzkB03 | 1.20.58.940 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 51.0 | 4.38e-01 | 75.0% | 47.1% |
| 2c9oB03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.72 | 58.0 | 4.93e-01 | 100.0% | 66.3% |
| 2l3wA01 | 1.10.3130.20 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › Phycobilisome linker domain | 0.70 | 58.0 | 4.29e-01 | 100.0% | 42.2% |
| 2lwdA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.66 | 57.0 | 4.49e-01 | 100.0% | 46.9% |
| 3racA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 49.0 | 2.95e-01 | 100.0% | 13.0% |
| 1r1mA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.56 | 41.0 | 3.02e-01 | 79.5% | 53.6% |
| 3nynA03 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.55 | 44.0 | 3.83e-01 | 100.0% | 61.7% |
| 3u50C01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 42.0 | 3.20e-01 | 95.5% | 68.5% |
| 3buxB02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 40.0 | 3.45e-01 | 100.0% | 62.9% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 39.0 | 3.39e-01 | 97.7% | 72.1% |
| 3hnrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 40.0 | 2.69e-01 | 90.9% | 93.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3887209 | 110.1.1.7 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD_2 | 0.72 | 62.0 | 4.75e-01 | 100.0% | 43.0% |
| 4383903 | 148.1.3.18 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C | 0.70 | 57.0 | 5.08e-01 | 100.0% | 71.4% |
| 4966006 | 2498.1.1.163 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF5781 | 0.70 | 51.0 | 3.25e-01 | 81.8% | 62.9% |
| 4853596 | 3144.1.1.1 ↗ | alpha arrays › PBS linker domain of phycobilisome linker polypeptide › PBS linker domain of phycobilisome linker polypeptide › PBS linker domain of phycobilisome linker polypeptide › PBS_linker_poly | 0.69 | 55.0 | 4.56e-01 | 97.7% | 50.0% |
| 3942493 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 55.0 | 4.70e-01 | 97.7% | 60.0% |
| 3874335 | 110.1.1.7 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD_2 | 0.66 | 58.0 | 4.38e-01 | 100.0% | 42.9% |
| 4025450 | 601.48.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain | 0.66 | 51.0 | 4.11e-01 | 88.6% | 71.1% |
| 3935265 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 58.0 | 5.61e-01 | 100.0% | 90.0% |
| 3697520 | 524.1.1.0 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p | 0.64 | 50.0 | 3.58e-01 | 90.9% | 53.1% |
| 4942063 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.61 | 48.0 | 4.36e-01 | 93.2% | 80.0% |
| 3561708 | 632.2.1.41 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › ALKL1_2 | 0.60 | 47.0 | 4.56e-01 | 97.7% | 94.5% |
| 3704553 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 44.0 | 4.00e-01 | 95.5% | 74.3% |
| 3893471 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.56 | 44.0 | 4.06e-01 | 90.9% | 93.3% |
| 1842651 | 2007.1.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › Asp_Glu_race | 0.54 | 43.0 | 3.30e-01 | 95.5% | 47.1% |
D2
high
residues 73-196
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fcnA00 | 1.20.1220.20 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Uncharcterised protein PF01724 | 0.55 | 41.0 | 3.79e-01 | 79.8% | 61.4% |
| 8cdaC01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.53 | 38.0 | 3.90e-01 | 100.0% | 77.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5026427 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.64 | 47.0 | 5.27e-01 | 96.8% | 100.0% |
| 3719269 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 29.0 | 3.36e-01 | 91.9% | 68.9% |
| 4180987 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 48.0 | 3.27e-01 | 99.2% | 68.9% |
| 4248030 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.54 | 48.0 | 3.28e-01 | 99.2% | 73.0% |
| 4310158 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.53 | 46.0 | 3.13e-01 | 98.4% | 69.6% |
D3
medium
residues 62-72_197-233_286-367
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.62 | 30.0 | 3.49e-01 | 71.5% | 63.0% |
| 1cpzA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 23.0 | 3.15e-01 | 94.6% | 69.1% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 33.0 | 3.73e-01 | 92.3% | 86.9% |
D4
medium
residues 234-285
D5
medium
residues 368-417_592-610_644-658_705-715
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jykA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.54 | 42.0 | 3.21e-01 | 83.2% | 81.2% |
| 3qz6A00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.51 | 44.0 | 3.23e-01 | 96.8% | 86.9% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3566979 | 2484.1.1.198 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, DUF4371 | 0.63 | 47.0 | 2.92e-01 | 80.0% | 73.7% |
| 3347628 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 45.0 | 3.40e-01 | 78.9% | 85.5% |
| 3920627 | 192.18.1.0 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like | 0.62 | 47.0 | 2.99e-01 | 82.1% | 79.0% |
| 3743318 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.61 | 49.0 | 3.85e-01 | 88.4% | 49.5% |
| 3527214 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.59 | 44.0 | 2.89e-01 | 81.1% | 73.1% |
| None | — | 0.59 | 44.0 | 3.91e-01 | 80.0% | 79.3% | |
| 3507177 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.59 | 43.0 | 2.88e-01 | 78.9% | 87.6% |
| 3938170 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.58 | 46.0 | 4.01e-01 | 86.3% | 95.3% |
| 3571382 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.58 | 42.0 | 2.74e-01 | 80.0% | 75.3% |
| 3661619 | 192.18.1.0 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like | 0.57 | 44.0 | 3.44e-01 | 84.2% | 77.8% |
| 3364681 | 2484.1.1.165 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 45.0 | 2.93e-01 | 84.2% | 96.0% |
| 3505861 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.57 | 43.0 | 3.15e-01 | 81.1% | 64.1% |
| 3780866 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.57 | 43.0 | 2.75e-01 | 81.1% | 75.8% |
| 3776862 | 2484.1.1.50 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT | 0.57 | 43.0 | 2.75e-01 | 80.0% | 88.1% |
| 3427901 | 2484.1.1.215 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27041 | 0.57 | 43.0 | 3.37e-01 | 83.2% | 86.7% |
| 3457175 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 43.0 | 3.19e-01 | 82.1% | 70.4% |
| 3841343 | 2484.1.1.239 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, PF27046, PF27073 | 0.56 | 41.0 | 2.68e-01 | 81.1% | 76.0% |
| 3566243 | 2484.1.1.239 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, PF27046, PF27073 | 0.55 | 41.0 | 2.69e-01 | 81.1% | 74.8% |
| 3504143 | 2484.1.1.230 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 | 0.55 | 41.0 | 3.53e-01 | 81.1% | 69.4% |
| 3924083 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.55 | 42.0 | 3.55e-01 | 84.2% | 94.7% |
| 3508989 | 2484.1.1.230 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 | 0.54 | 41.0 | 3.56e-01 | 81.1% | 78.7% |
| 3335943 | 2484.1.1.165 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 42.0 | 2.67e-01 | 83.2% | 85.2% |
| 3343696 | 2484.1.1.165 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 42.0 | 2.85e-01 | 85.3% | 39.3% |
| 5075930 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.54 | 44.0 | 4.01e-01 | 93.7% | 85.8% |
| 3986558 | 2484.1.1.231 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66, DDE_Tnp_IS66_C | 0.53 | 39.0 | 3.20e-01 | 77.9% | 58.3% |
| 4666229 | 268.1.1.5 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › MycE_N | 0.53 | 45.0 | 3.88e-01 | 91.6% | 76.6% |
| 3562870 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.52 | 39.0 | 2.53e-01 | 81.1% | 76.2% |
| 5033910 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.52 | 41.0 | 3.82e-01 | 87.4% | 87.2% |
| 3537025 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 39.0 | 2.45e-01 | 81.1% | 75.2% |
| 4980563 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.51 | 41.0 | 2.99e-01 | 89.5% | 64.6% |
D6
medium
residues 444-562
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ze7A02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.56 | 30.0 | 3.18e-01 | 79.8% | 55.9% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4449691 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.58 | 28.0 | 3.69e-01 | 71.4% | 84.1% |
| 3240101 | 212.1.1.6 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal_S9 | 0.55 | 39.0 | 2.86e-01 | 89.1% | 26.6% |
| 3693567 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.51 | 29.0 | 3.30e-01 | 84.0% | 72.2% |