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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00183
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00183
Identity
- Kingdom:
- phage
Quality
89.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 209-376
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2id1A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.58 | 24.0 | 3.05e-01 | 85.1% | 60.6% |
| 1yrvA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.53 | 39.0 | 4.11e-01 | 83.9% | 83.0% |
| 2yh6D00 | 3.30.530.50 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.53 | 31.0 | 3.82e-01 | 73.2% | 89.1% |
| 1em2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 36.0 | 3.37e-01 | 73.2% | 63.6% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4587271 | 9002.1.1.1 ↗ | a/b three-layered sandwiches › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 | 0.77 | 25.0 | 4.57e-01 | 82.1% | 100.0% |
| 4995145 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.66 | 32.0 | 4.41e-01 | 85.1% | 91.8% |
| 3169646 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.62 | 35.0 | 4.51e-01 | 70.2% | 98.9% |
| 3279654 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.61 | 42.0 | 4.72e-01 | 71.4% | 94.8% |
| 4975323 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.57 | 29.0 | 3.76e-01 | 81.0% | 87.8% |
| 4028149 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.57 | 29.0 | 3.80e-01 | 73.8% | 87.4% |
| 5004871 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.57 | 28.0 | 3.70e-01 | 73.2% | 86.7% |
| 3516693 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.55 | 37.0 | 4.38e-01 | 87.5% | 100.0% |
| 4991248 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 39.0 | 3.66e-01 | 72.0% | 90.2% |
| 4964003 | 241.1.1.29 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF5813 | 0.54 | 38.0 | 3.94e-01 | 70.8% | 84.5% |
| 4014135 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.54 | 38.0 | 3.80e-01 | 72.6% | 99.4% |
| 5055761 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.52 | 37.0 | 4.04e-01 | 72.6% | 99.3% |
| 3717196 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.51 | 38.0 | 3.46e-01 | 77.4% | 95.6% |
| 2814969 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.50 | 34.0 | 3.61e-01 | 73.2% | 77.4% |
| 2032855 | 9.28.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Barrel domain in extracellular arabinanase › Barrel domain in extracellular arabinanase › GH43_C | 0.50 | 28.0 | 3.47e-01 | 83.3% | 89.1% |
D2
medium
residues 8-74
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p58C00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 37.0 | 3.09e-01 | 95.5% | 32.1% |
| 3zvkA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.65 | 40.0 | 3.22e-01 | 92.5% | 30.6% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.62 | 42.0 | 4.25e-01 | 89.6% | 69.1% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.61 | 38.0 | 4.15e-01 | 86.6% | 76.4% |
| 5t3wA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 44.0 | 3.49e-01 | 86.6% | 56.2% |
| 4evfA01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.55 | 33.0 | 3.28e-01 | 98.5% | 56.3% |
| 4h79A00 | 1.10.520.40 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 | 0.54 | 50.0 | 3.59e-01 | 100.0% | 84.7% |
| 3gn4A00 | 6.10.220.10 | Special › Helix non-globular › Helical scaffold and wing domains of SecA › | 0.54 | 36.0 | 2.92e-01 | 100.0% | 36.4% |
| 2k3qA00 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.53 | 35.0 | 2.98e-01 | 98.5% | 38.1% |
| 7s0rB01 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.53 | 37.0 | 3.60e-01 | 98.5% | 65.8% |
| 3lmfA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 44.0 | 3.80e-01 | 100.0% | 96.3% |
| 2ofyA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.50 | 36.0 | 3.57e-01 | 85.1% | 72.9% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1039114 | 3663.1.1.1 ↗ | alpha bundles › CRISPR-associated protein Cse2 › CRISPR-associated protein Cse2 › CRISPR-associated protein Cse2 › CRISPR_Cse2 | 0.54 | 50.0 | 3.59e-01 | 100.0% | 84.7% |
| 3643457 | 219.1.1.71 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 | 0.52 | 44.0 | 3.18e-01 | 92.5% | 65.9% |
| 3709217 | 574.1.1.1 ↗ | alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp | 0.52 | 35.0 | 3.52e-01 | 97.0% | 67.1% |
D3
medium
residues 77-208
Domain cluster:
rep: LSDeep1_scaffold_41_prodigal-single.1__X__X__00147__D5-134
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ku9B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 32.0 | 3.90e-01 | 94.7% | 77.0% |
| 5x8rr00 | 4.10.640.10 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › Ribosomal protein S18 | 0.59 | 23.0 | 3.32e-01 | 81.8% | 75.0% |
| 1ucrB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 31.0 | 3.99e-01 | 90.2% | 90.7% |
| 4g6qA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 32.0 | 3.75e-01 | 90.2% | 81.6% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 31.0 | 3.50e-01 | 91.7% | 68.3% |
| 2b0lC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 32.0 | 3.70e-01 | 89.4% | 77.7% |
| 2dt9A01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 24.0 | 3.09e-01 | 84.8% | 68.9% |
| 2f2eA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 29.0 | 3.38e-01 | 91.7% | 71.4% |
| 3mczA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 41.0 | 3.36e-01 | 79.5% | 84.6% |
| 2zkzC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 28.0 | 3.33e-01 | 90.2% | 74.7% |
| 4e9jA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 23.0 | 3.08e-01 | 78.8% | 78.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3262891 | 101.1.2.79 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 | 0.67 | 33.0 | 4.48e-01 | 90.9% | 95.4% |
| 5082589 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.59 | 31.0 | 3.84e-01 | 90.9% | 81.2% |
| 3426878 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.57 | 35.0 | 4.00e-01 | 90.9% | 82.0% |
| 4490167 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.57 | 33.0 | 3.63e-01 | 90.9% | 70.5% |
| 3500170 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 32.0 | 3.77e-01 | 93.2% | 82.2% |
| 3468120 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.55 | 32.0 | 3.79e-01 | 90.9% | 87.1% |
| 3721121 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 30.0 | 3.39e-01 | 90.2% | 69.0% |
| 3364232 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.53 | 31.0 | 3.66e-01 | 90.9% | 87.1% |
| 3651024 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.52 | 32.0 | 3.41e-01 | 90.9% | 70.0% |
| 3782906 | 101.1.2.311 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA12 | 0.52 | 33.0 | 3.63e-01 | 93.9% | 76.4% |
| 5045953 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 33.0 | 3.43e-01 | 92.4% | 68.0% |
| 5077975 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 30.0 | 3.28e-01 | 91.7% | 71.4% |
| 3613028 | 320.4.1.3 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB | 0.50 | 33.0 | 3.47e-01 | 89.4% | 74.8% |