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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00210

Bact-Vir

SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00210

Identity

Kingdom:
phage

Quality

71.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 14-80
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 41.0 3.71e-01 71.6% 58.1%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.60 44.0 3.43e-01 77.6% 41.6%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 38.0 2.85e-01 70.1% 36.5%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.53 36.0 2.75e-01 70.1% 67.1%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 36.0 2.99e-01 71.6% 84.3%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 39.0 2.82e-01 88.1% 96.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5028776 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 50.0 5.64e-01 74.6% 96.0%
5061538 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 52.0 5.63e-01 77.6% 100.0%
4992543 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 52.0 5.57e-01 80.6% 94.5%
4993925 375.1.1.338 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7479 0.68 46.0 5.07e-01 70.1% 100.0%
3404356 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 51.0 3.46e-01 82.1% 38.6%
4618205 604.1.1.150 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.65 52.0 4.21e-01 98.5% 47.5%
4959386 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 43.0 4.65e-01 73.1% 98.0%
3610398 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 46.0 4.46e-01 88.1% 69.3%
3817316 376.1.4.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.61 55.0 5.30e-01 100.0% 90.7%
3790626 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 42.0 2.94e-01 73.1% 31.4%
3616025 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 42.0 2.91e-01 73.1% 30.0%
5061081 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.58 40.0 4.34e-01 80.6% 98.0%
3200542 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.57 40.0 3.04e-01 74.6% 96.4%
3986315 205.1.1.17 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 0.55 46.0 2.80e-01 94.0% 71.6%
3405299 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 41.0 2.81e-01 85.1% 72.9%
3658440 386.1.1.26 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 0.51 33.0 3.49e-01 88.1% 80.0%
None — 0.51 43.0 2.87e-01 100.0% 97.7%