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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00211

Bact-Vir

SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00211

Identity

Kingdom:
phage

Quality

69.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-100
PDB
Domain cluster: rep: NC_070967.1__YP_010671287.1__PQC17_gp138__00138__D8-94
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.55 36.0 3.27e-01 80.0% 48.6%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 44.0 4.31e-01 96.0% 91.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3267786 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.58 40.0 4.37e-01 100.0% 88.7%
3826725 5061.1.1.1 ↗ alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY 0.56 42.0 2.84e-01 82.0% 92.6%
3712799 219.1.1.47 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Nt_Gln_amidase 0.55 49.0 3.90e-01 100.0% 60.0%
3281526 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.55 48.0 3.36e-01 99.0% 46.1%
4116168 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.51 45.0 3.84e-01 96.0% 66.3%
3917458 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.51 38.0 4.01e-01 98.0% 88.9%