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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00229
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00229
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-96
Domain cluster:
rep: JN638751.1__AEO93772.1__G_514__00506__D4-138
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21986.2 best | AH_C | 38.1 | 1.90e-09 | 99.0% | 79.7% |
| PF06094.18 | GGACT | 65.8 | 7.60e-18 | 96.8% | 79.2% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5c5zA00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.95 | 91.0 | 8.10e-01 | 100.0% | 78.7% |
| 4issA03 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.94 | 90.0 | 7.73e-01 | 100.0% | 76.6% |
| 1vkbA00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.93 | 89.0 | 7.50e-01 | 100.0% | 76.9% |
| 1v30A00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.91 | 84.0 | 7.67e-01 | 100.0% | 78.0% |
| 2qikA01 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.89 | 85.0 | 8.01e-01 | 100.0% | 87.3% |
| 2i5tA00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.87 | 82.0 | 6.58e-01 | 100.0% | 66.3% |
| 2g0qA01 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.85 | 80.0 | 7.44e-01 | 100.0% | 88.7% |
| 1xhsA00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.79 | 72.0 | 6.75e-01 | 98.9% | 82.3% |
| 2cz4A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 46.0 | 4.54e-01 | 96.8% | 81.8% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 45.0 | 4.44e-01 | 95.8% | 80.2% |
| 2zomA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 45.0 | 4.32e-01 | 95.8% | 74.8% |
| 2e9xB01 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.56 | 30.0 | 3.53e-01 | 95.8% | 74.2% |
| 4iyqA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 43.0 | 4.16e-01 | 96.8% | 76.6% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 42.0 | 4.47e-01 | 90.5% | 98.8% |
| 4e98C00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 43.0 | 4.25e-01 | 95.8% | 80.0% |
| 3uwpA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 38.0 | 3.02e-01 | 75.8% | 86.4% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 4.13e-01 | 94.7% | 78.3% |
| 4y6iA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 4.14e-01 | 94.7% | 81.6% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 4.39e-01 | 96.8% | 93.5% |
| 7ob9B02 | 3.90.1800.10 | Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain | 0.52 | 31.0 | 3.09e-01 | 77.9% | 54.9% |
| 8cwoF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 43.0 | 4.38e-01 | 96.8% | 96.7% |
| 2j5aA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.51 | 42.0 | 4.14e-01 | 93.7% | 94.3% |
| 2od4B01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 41.0 | 4.20e-01 | 95.8% | 94.4% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 38.0 | 4.12e-01 | 93.7% | 98.7% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1680418 | 810.1.1.5 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AH_C | 0.95 | 91.0 | 8.10e-01 | 100.0% | 78.7% |
| 3285708 | 810.1.1.5 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AH_C | 0.95 | 91.0 | 8.14e-01 | 100.0% | 79.2% |
| 4484624 | 810.1.1.5 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AH_C | 0.94 | 89.0 | 7.61e-01 | 98.9% | 74.3% |
| 3784619 | 810.1.1.5 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AH_C | 0.94 | 88.0 | 7.88e-01 | 97.9% | 81.6% |
| 5003177 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.94 | 88.0 | 8.04e-01 | 98.9% | 79.2% |
| 3551394 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.93 | 89.0 | 7.37e-01 | 100.0% | 79.1% |
| 3895480 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.93 | 89.0 | 7.50e-01 | 100.0% | 79.3% |
| 4224543 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.91 | 88.0 | 7.83e-01 | 100.0% | 84.0% |
| 3927947 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.91 | 87.0 | 7.34e-01 | 100.0% | 75.9% |
| 4443063 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.91 | 87.0 | 7.89e-01 | 100.0% | 81.7% |
| 5572 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.91 | 84.0 | 7.67e-01 | 100.0% | 78.0% |
| 5009354 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.90 | 84.0 | 7.53e-01 | 97.9% | 83.2% |
| 5062815 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.90 | 82.0 | 7.81e-01 | 96.8% | 83.5% |
| 4997425 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.90 | 84.0 | 7.22e-01 | 98.9% | 85.7% |
| 5049926 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.89 | 84.0 | 7.88e-01 | 100.0% | 90.3% |
| 3773546 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.87 | 82.0 | 6.56e-01 | 100.0% | 64.7% |
| 3638739 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.87 | 82.0 | 6.62e-01 | 100.0% | 66.9% |
| 3404781 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.87 | 82.0 | 6.40e-01 | 100.0% | 58.9% |
| 3696210 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.87 | 82.0 | 6.71e-01 | 100.0% | 80.6% |
| 3902399 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.87 | 82.0 | 6.44e-01 | 100.0% | 61.7% |
| 3955760 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.87 | 81.0 | 6.86e-01 | 98.9% | 68.3% |
| 4976343 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.86 | 81.0 | 7.62e-01 | 100.0% | 94.7% |
| 3185310 | 810.1.1.0 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) | 0.86 | 81.0 | 6.35e-01 | 100.0% | 74.6% |
| 4021972 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.86 | 81.0 | 6.47e-01 | 98.9% | 65.9% |
| 4973218 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.86 | 81.0 | 7.55e-01 | 100.0% | 93.9% |
| 3192937 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.86 | 80.0 | 6.27e-01 | 98.9% | 73.0% |
| 4934164 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.86 | 81.0 | 6.87e-01 | 100.0% | 73.1% |
| 3471830 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.86 | 81.0 | 6.32e-01 | 100.0% | 59.6% |
| 3284703 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.85 | 79.0 | 6.95e-01 | 98.9% | 71.9% |
| 5079168 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.85 | 80.0 | 6.81e-01 | 100.0% | 72.4% |
| 3959699 | 810.1.1.0 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) | 0.85 | 79.0 | 6.69e-01 | 100.0% | 74.7% |
| 5009355 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.85 | 79.0 | 6.93e-01 | 100.0% | 78.5% |
| 3207761 | 810.1.1.0 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) | 0.85 | 79.0 | 7.25e-01 | 100.0% | 86.7% |
| 3730619 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.85 | 79.0 | 7.50e-01 | 100.0% | 91.8% |
| 3278316 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.84 | 79.0 | 6.57e-01 | 100.0% | 71.0% |
| 3193618 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.84 | 79.0 | 6.45e-01 | 100.0% | 74.2% |
| 4959164 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.83 | 77.0 | 7.33e-01 | 100.0% | 95.5% |
| 3798718 | 810.1.1.0 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) | 0.83 | 77.0 | 5.98e-01 | 98.9% | 57.9% |
| 3630947 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.82 | 76.0 | 7.29e-01 | 100.0% | 96.3% |
| 3735499 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.82 | 77.0 | 5.93e-01 | 100.0% | 75.5% |
| 3583595 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.62 | 37.0 | 4.54e-01 | 91.6% | 95.0% |
| 4929832 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.56 | 48.0 | 4.66e-01 | 96.8% | 85.6% |
| 2986050 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.54 | 45.0 | 4.06e-01 | 92.6% | 87.8% |
| 3513084 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.54 | 42.0 | 3.85e-01 | 85.3% | 71.5% |
| 3933223 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.52 | 44.0 | 4.00e-01 | 93.7% | 76.2% |
| 4929030 | 304.5.1.1 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II | 0.52 | 45.0 | 4.35e-01 | 96.8% | 83.6% |
| 3232018 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.51 | 43.0 | 3.83e-01 | 95.8% | 64.8% |
| 3477312 | 304.9.1.81 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A | 0.51 | 41.0 | 3.18e-01 | 91.6% | 50.4% |
| 3497701 | 304.9.1.81 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A | 0.51 | 41.0 | 3.65e-01 | 91.6% | 80.4% |
| 3056237 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.51 | 42.0 | 4.10e-01 | 92.6% | 100.0% |