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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00249
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00249
Identity
- Kingdom:
- phage
Quality
91.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 2-65
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b6dB00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.69 | 44.0 | 4.69e-01 | 100.0% | 73.7% |
| 1uw0A01 | 3.30.1740.10 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type | 0.67 | 52.0 | 4.56e-01 | 100.0% | 56.2% |
| 4v3lC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.66 | 47.0 | 4.63e-01 | 100.0% | 69.6% |
| 4gniA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.59 | 42.0 | 4.40e-01 | 93.8% | 84.2% |
| 2x5rA01 | 3.30.470.40 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.57 | 48.0 | 4.00e-01 | 95.3% | 64.3% |
| 4hi8B00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.54 | 47.0 | 4.56e-01 | 100.0% | 84.7% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.52 | 42.0 | 3.41e-01 | 96.9% | 64.8% |
| 2vp7A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 46.0 | 4.56e-01 | 100.0% | 93.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3336718 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.76 | 56.0 | 5.10e-01 | 100.0% | 58.8% |
| 3803132 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.71 | 48.0 | 5.58e-01 | 100.0% | 100.0% |
| 4028826 | 377.1.2.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger | 0.70 | 54.0 | 4.41e-01 | 100.0% | 45.0% |
| 3816530 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.69 | 50.0 | 4.26e-01 | 100.0% | 49.0% |
| 5045085 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.67 | 50.0 | 4.65e-01 | 100.0% | 63.7% |
| 3662203 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.67 | 49.0 | 4.46e-01 | 100.0% | 58.8% |
| 3433991 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.66 | 48.0 | 3.88e-01 | 100.0% | 40.8% |
| 3250863 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.66 | 50.0 | 4.53e-01 | 100.0% | 61.2% |
| 3351761 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.65 | 47.0 | 4.14e-01 | 100.0% | 51.6% |
| 3955047 | 376.1.2.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF27609 | 0.65 | 51.0 | 5.30e-01 | 100.0% | 91.7% |
| 3647459 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.65 | 47.0 | 4.52e-01 | 100.0% | 66.7% |
| 3328008 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.64 | 48.0 | 4.47e-01 | 100.0% | 64.6% |
| 4021561 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.64 | 51.0 | 4.33e-01 | 100.0% | 53.3% |
| 3691117 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 48.0 | 4.31e-01 | 100.0% | 59.1% |
| 4961820 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.63 | 42.0 | 4.40e-01 | 70.3% | 78.3% |
| 3444560 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.61 | 50.0 | 4.73e-01 | 100.0% | 76.0% |
| 3592264 | 377.1.2.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger | 0.60 | 53.0 | 4.33e-01 | 96.9% | 74.8% |
| 3700246 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.60 | 53.0 | 4.39e-01 | 98.4% | 73.9% |
| 3307860 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.60 | 45.0 | 4.20e-01 | 87.5% | 65.0% |
| 4946152 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.59 | 49.0 | 3.48e-01 | 92.2% | 43.0% |
| 3268433 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.59 | 48.0 | 4.49e-01 | 100.0% | 71.2% |
| 4962355 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 49.0 | 4.17e-01 | 93.8% | 89.1% |
| 3703254 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.59 | 40.0 | 3.73e-01 | 70.3% | 56.2% |
| 3822097 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.58 | 52.0 | 3.88e-01 | 100.0% | 43.1% |
| 3909802 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.58 | 46.0 | 4.00e-01 | 87.5% | 59.0% |
| 4019523 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.56 | 44.0 | 3.19e-01 | 93.8% | 90.2% |
| 3690939 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.56 | 45.0 | 3.21e-01 | 95.3% | 90.2% |
| 3331245 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.55 | 47.0 | 4.17e-01 | 100.0% | 66.3% |
| 3477933 | 207.1.1.137 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 | 0.55 | 42.0 | 2.93e-01 | 87.5% | 36.1% |
| 3509813 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.53 | 43.0 | 2.99e-01 | 95.3% | 90.0% |
| 4455492 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.52 | 41.0 | 2.88e-01 | 95.3% | 92.4% |
| 3235864 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 44.0 | 4.20e-01 | 95.3% | 97.3% |
| 3808068 | 207.1.1.124 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › At3g27290_F_box_C | 0.51 | 43.0 | 2.95e-01 | 93.8% | 97.8% |
| 3745904 | 377.1.1.8 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e | 0.51 | 39.0 | 3.82e-01 | 92.2% | 76.0% |
| 3430247 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.50 | 42.0 | 3.63e-01 | 95.3% | 70.2% |
D2
medium
residues 71-113
Domain cluster:
representative