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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00272

Bact-Vir

SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00272

Identity

Kingdom:
phage

Quality

87.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-80
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04193.20 best PQ-loop 30.8 2.80e-07 74.4% 82.0%
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 75.0 7.39e-01 100.0% 95.2%
5ejrA01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.82 64.0 4.65e-01 98.7% 31.8%
4x5mA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.79 71.0 6.90e-01 100.0% 91.9%
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.78 70.0 6.10e-01 100.0% 83.2%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 56.0 6.22e-01 75.6% 96.7%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.75 68.0 6.12e-01 100.0% 89.6%
3cegA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.74 67.0 4.47e-01 100.0% 29.1%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.73 66.0 5.92e-01 100.0% 90.7%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.73 66.0 5.70e-01 98.7% 78.8%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.72 64.0 5.95e-01 98.7% 94.9%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.72 50.0 3.97e-01 71.8% 38.6%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 59.0 4.66e-01 93.6% 43.8%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 59.0 6.07e-01 98.7% 98.6%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.71 58.0 5.52e-01 87.2% 96.7%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.71 60.0 5.80e-01 93.6% 95.4%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 62.0 5.72e-01 100.0% 100.0%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.70 58.0 5.58e-01 93.6% 87.9%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.69 60.0 5.91e-01 100.0% 91.8%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 60.0 5.48e-01 100.0% 90.5%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 58.0 5.07e-01 98.7% 82.8%
3o7pA01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.67 52.0 3.82e-01 84.6% 62.8%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.66 57.0 5.11e-01 100.0% 69.0%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 58.0 5.25e-01 100.0% 94.3%
3a7mA01 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.65 60.0 5.32e-01 100.0% 74.5%
1k3kA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.62 50.0 4.16e-01 98.7% 48.6%
3d1uA03 1.20.1270.240 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 39.0 3.57e-01 73.1% 49.5%
4mhlA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.61 53.0 4.19e-01 97.4% 75.8%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.61 40.0 4.41e-01 71.8% 82.8%
3eupB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 51.0 3.92e-01 100.0% 72.5%
5ha6B00 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 41.0 4.09e-01 71.8% 75.9%
4yjwA00 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.58 51.0 4.14e-01 100.0% 58.8%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.57 50.0 4.17e-01 98.7% 89.2%
3lmfA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 48.0 4.39e-01 100.0% 71.6%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.57 48.0 4.36e-01 100.0% 74.6%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.56 41.0 3.63e-01 75.6% 59.6%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.54 47.0 4.49e-01 100.0% 93.5%
5u9nB00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 45.0 3.86e-01 91.0% 79.2%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.53 42.0 4.49e-01 85.9% 100.0%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 43.0 3.95e-01 89.7% 70.3%
3sjrA00 1.10.132.90 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.52 44.0 3.84e-01 98.7% 92.9%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 42.0 3.67e-01 98.7% 68.7%
1or7B01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.50 38.0 3.57e-01 80.8% 85.1%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004033 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.89 80.0 7.62e-01 96.2% 85.6%
5019543 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.89 82.0 7.41e-01 97.4% 77.0%
4182984 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.87 80.0 7.08e-01 100.0% 78.2%
3578534 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.87 80.0 7.18e-01 100.0% 82.9%
4929003 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.87 80.0 7.58e-01 100.0% 87.8%
3783023 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.86 80.0 7.15e-01 100.0% 85.7%
4182983 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.86 79.0 7.00e-01 100.0% 81.8%
3783043 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.86 79.0 7.50e-01 100.0% 95.6%
3736461 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.85 77.0 7.50e-01 98.7% 95.3%
4959463 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.85 76.0 7.62e-01 98.7% 97.5%
3371141 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.84 77.0 6.79e-01 100.0% 81.8%
3394485 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.84 76.0 7.40e-01 97.4% 92.9%
5013782 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.84 74.0 7.59e-01 96.2% 100.0%
3699643 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.84 76.0 7.37e-01 98.7% 95.3%
3782487 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.83 74.0 6.11e-01 97.4% 58.5%
3723517 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.82 76.0 7.40e-01 100.0% 95.3%
3712829 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.82 73.0 6.58e-01 97.4% 77.1%
4955480 6155.1.1.8 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › Pyr4-TMTC 0.82 74.0 5.93e-01 100.0% 56.7%
3245192 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.82 74.0 7.24e-01 100.0% 92.9%
3833881 6155.1.1.16 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PF28566 0.82 75.0 6.22e-01 100.0% 67.7%
3202941 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.81 74.0 6.46e-01 100.0% 72.2%
4999891 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.81 62.0 5.62e-01 85.9% 61.0%
3404886 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.81 72.0 7.15e-01 97.4% 97.5%
3256571 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.81 72.0 6.73e-01 97.4% 83.2%
3513440 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.80 73.0 6.29e-01 100.0% 82.5%
3210969 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.80 72.0 6.71e-01 97.4% 83.2%
3787067 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.80 72.0 6.16e-01 100.0% 74.4%
5034342 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.80 70.0 7.00e-01 97.4% 97.5%
3695128 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.79 70.0 6.68e-01 97.4% 88.9%
3862034 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.79 68.0 6.66e-01 96.2% 91.8%
4200933 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.78 71.0 6.62e-01 100.0% 85.3%
3938825 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.78 69.0 6.73e-01 97.4% 91.8%
3330676 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.78 68.0 6.56e-01 98.7% 87.8%
3378266 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.77 69.0 5.44e-01 97.4% 51.6%
4106741 6155.1.1.8 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › Pyr4-TMTC 0.77 65.0 6.22e-01 93.6% 94.4%
3791287 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.77 69.0 6.63e-01 100.0% 91.1%
3256951 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.76 67.0 5.95e-01 100.0% 69.6%
3728733 5050.1.1.56 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr, TRI12 0.76 57.0 3.57e-01 79.5% 16.8%
3251303 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.76 67.0 6.72e-01 97.4% 95.0%
3628101 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.76 69.0 5.84e-01 100.0% 68.0%
3721346 5050.1.1.12 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › TRI12 0.76 56.0 4.81e-01 78.2% 53.3%
3366463 622.4.1.36 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › DUF6857 0.75 67.0 5.05e-01 100.0% 51.9%
3257841 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.75 66.0 6.08e-01 98.7% 81.0%
4025878 3718.1.1.0 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT 0.75 67.0 6.56e-01 100.0% 95.3%
3404235 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.74 65.0 5.61e-01 100.0% 68.0%
3257840 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.74 65.0 5.16e-01 100.0% 58.2%
3660671 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.74 64.0 5.60e-01 100.0% 73.6%
3351812 601.1.3.11 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › A middle domain of Talin 1 › PF28566 0.74 65.0 4.96e-01 100.0% 47.6%
3901917 1134.1.1.7 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.73 60.0 6.30e-01 98.7% 100.0%
3697268 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.73 63.0 5.54e-01 100.0% 81.7%
3925930 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.72 62.0 5.81e-01 98.7% 89.0%
3429164 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 62.0 5.89e-01 97.4% 87.4%
144027 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.71 59.0 5.26e-01 93.6% 64.0%
3245201 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.71 62.0 5.19e-01 100.0% 60.7%
3360681 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.71 61.0 5.20e-01 100.0% 66.7%
3504301 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 59.0 5.29e-01 93.6% 86.4%
3246610 109.26.1.6 alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › TPR_NUP160_120_M 0.69 61.0 3.81e-01 100.0% 40.2%
4969464 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.68 59.0 5.64e-01 96.2% 91.1%
5074955 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.67 48.0 4.63e-01 75.6% 65.6%
3768254 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.67 60.0 5.61e-01 100.0% 88.4%
5060042 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.64 55.0 4.41e-01 91.0% 78.6%
3517735 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.62 44.0 3.28e-01 73.1% 28.5%
3928445 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.59 49.0 3.91e-01 89.7% 86.7%
4541467 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.58 40.0 3.11e-01 70.5% 62.2%
5058368 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.58 55.0 5.26e-01 100.0% 92.1%
5075474 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.56 48.0 4.77e-01 92.3% 92.5%
3880410 164.1.1.3 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › Get2_like 0.56 45.0 3.97e-01 88.5% 64.3%
4134991 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.54 45.0 4.17e-01 92.3% 74.0%
4948274 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.52 43.0 4.38e-01 89.7% 96.0%
3865887 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.52 46.0 4.50e-01 98.7% 95.3%
4008532 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.51 46.0 4.46e-01 97.4% 94.1%