←Back to structures
SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00278
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00278
Identity
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-89
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eifA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 36.0 | 4.20e-01 | 94.3% | 91.5% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 36.0 | 4.01e-01 | 94.3% | 89.1% |
| 2jjqA03 | 2.40.50.1070 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 46.0 | 4.03e-01 | 97.7% | 99.3% |
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.53 | 45.0 | 3.99e-01 | 97.7% | 97.1% |
| 1t9hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 37.0 | 3.95e-01 | 96.6% | 86.3% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 32.0 | 3.65e-01 | 98.9% | 83.1% |
| 2w20B01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 44.0 | 2.98e-01 | 98.9% | 70.2% |
| 1ln1A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 43.0 | 3.42e-01 | 95.4% | 56.7% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 32.0 | 3.64e-01 | 97.7% | 91.5% |
| 2vpjA00 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.51 | 43.0 | 3.13e-01 | 100.0% | 75.4% |
| 1noyB02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 43.0 | 3.26e-01 | 97.7% | 43.4% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 39.0 | 3.74e-01 | 85.1% | 98.1% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.50 | 34.0 | 3.58e-01 | 79.3% | 80.0% |
| 4ckbD03 | 2.40.50.830 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 43.0 | 3.81e-01 | 97.7% | 79.1% |
| 1qw2A00 | 3.30.1980.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC | 0.50 | 43.0 | 4.14e-01 | 100.0% | 85.3% |
| 2gcuA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 43.0 | 3.24e-01 | 100.0% | 55.7% |
| 2pmaA01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.50 | 39.0 | 3.55e-01 | 100.0% | 61.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3740759 | 4099.1.1.3 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 | 0.60 | 36.0 | 4.13e-01 | 98.9% | 85.0% |
| 4051081 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.56 | 36.0 | 4.20e-01 | 97.7% | 95.0% |
| 5049449 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 32.0 | 3.88e-01 | 89.7% | 98.0% |
| 3764574 | 3338.2.1.1 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › Pep_M12B_propep | 0.54 | 46.0 | 4.01e-01 | 100.0% | 87.1% |
| 4161829 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 35.0 | 3.74e-01 | 94.3% | 77.3% |
| 3197234 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.53 | 37.0 | 3.43e-01 | 71.3% | 85.5% |
| 3554870 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.52 | 43.0 | 3.41e-01 | 95.4% | 56.1% |
| 3797107 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 40.0 | 3.92e-01 | 95.4% | 76.8% |
| 4393621 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.52 | 44.0 | 3.21e-01 | 100.0% | 79.1% |
| 4999520 | 2008.1.1.44 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FokI_cleav_dom | 0.51 | 43.0 | 3.57e-01 | 98.9% | 77.6% |