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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00286
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00286
Identity
- Kingdom:
- phage
Quality
91.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-106
Domain cluster:
rep: S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00103__D53-127
D2
high
residues 121-216
Domain cluster:
rep: BML_coassembly_scaffold_50_prodigal-single.1__X__X__00053__D9-113
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ebfX01 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.60 | 53.0 | 4.29e-01 | 100.0% | 61.7% |
| 4xcmA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.56 | 48.0 | 4.46e-01 | 95.8% | 81.3% |
| 1xovA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 37.0 | 4.35e-01 | 81.2% | 100.0% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.55 | 34.0 | 3.25e-01 | 90.6% | 53.1% |
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.53 | 35.0 | 3.14e-01 | 88.5% | 46.1% |
| 1fx7B03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.52 | 37.0 | 4.04e-01 | 74.0% | 90.0% |
| 3h41A03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.52 | 46.0 | 4.23e-01 | 96.9% | 76.2% |
| 2rm4A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 34.0 | 3.85e-01 | 72.9% | 98.5% |
| 3k6yA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 35.0 | 3.57e-01 | 71.9% | 81.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3721511 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.69 | 63.0 | 4.73e-01 | 100.0% | 64.9% |
| 5055945 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.61 | 54.0 | 4.68e-01 | 96.9% | 63.4% |
| 3945044 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.56 | 43.0 | 3.91e-01 | 84.4% | 61.2% |
| 3996204 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 40.0 | 3.75e-01 | 79.2% | 77.5% |
| 3203375 | 219.1.1.129 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 | 0.53 | 38.0 | 3.49e-01 | 75.0% | 100.0% |
| 3619467 | 220.1.1.84 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 | 0.53 | 42.0 | 4.04e-01 | 85.4% | 90.0% |
| 3341084 | 219.1.1.25 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT | 0.53 | 39.0 | 3.87e-01 | 77.1% | 91.0% |
| 5063005 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.51 | 44.0 | 4.16e-01 | 96.9% | 77.1% |
D3
high
residues 220-317
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1doqA00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.61 | 40.0 | 4.63e-01 | 76.5% | 95.7% |
| 5c8gB00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.56 | 40.0 | 3.77e-01 | 72.4% | 87.2% |
| 3mg2B01 | 1.10.2090.10 | Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain | 0.52 | 35.0 | 3.10e-01 | 70.4% | 90.5% |
| 3cqcB01 | 1.20.58.1380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 37.0 | 3.87e-01 | 95.9% | 85.6% |
| 4fnvA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.50 | 41.0 | 2.83e-01 | 91.8% | 68.2% |