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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00341
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00341
Identity
- Kingdom:
- phage
Quality
84.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 42-95_241-308
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ag6A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.71 | 65.0 | 5.12e-01 | 100.0% | 83.6% |
| 1w5sA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 62.0 | 5.37e-01 | 99.2% | 87.4% |
| 6s8oB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 54.0 | 4.54e-01 | 99.2% | 84.0% |
| 6znpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 52.0 | 4.40e-01 | 99.2% | 83.0% |
| 3v9pB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 48.0 | 4.16e-01 | 100.0% | 89.1% |
| 3cssA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 47.0 | 3.73e-01 | 100.0% | 82.6% |
| 2qtlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.53 | 46.0 | 4.30e-01 | 98.4% | 96.8% |
| 7s5lA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 41.0 | 2.99e-01 | 86.1% | 90.3% |
| 1af7A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 43.0 | 3.70e-01 | 91.8% | 92.8% |
| 2bdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 46.0 | 4.10e-01 | 99.2% | 100.0% |
| 1dz3A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 40.0 | 4.01e-01 | 96.7% | 83.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1002415 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.70 | 63.0 | 5.28e-01 | 97.5% | 80.1% |
| 3702837 | 2004.1.1.292 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AFG1_ATPase | 0.64 | 58.0 | 5.31e-01 | 100.0% | 88.7% |
| 4213018 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.59 | 52.0 | 4.42e-01 | 100.0% | 86.2% |
| 4444241 | 2003.1.5.364 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NAD_binding_4, Methyltransf_12 | 0.57 | 51.0 | 3.20e-01 | 100.0% | 50.6% |
| 4524118 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.56 | 49.0 | 4.16e-01 | 100.0% | 87.1% |
| 3199275 | 2004.1.1.240 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Utp25_C | 0.55 | 48.0 | 4.17e-01 | 98.4% | 96.4% |
| 5009778 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.55 | 49.0 | 4.11e-01 | 100.0% | 88.1% |
| 3612792 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 48.0 | 3.96e-01 | 100.0% | 96.1% |
| 3348426 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.54 | 48.0 | 4.31e-01 | 100.0% | 89.1% |
| 4029853 | 2003.1.5.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F | 0.54 | 44.0 | 3.12e-01 | 92.6% | 49.4% |
| 3218042 | 2004.1.1.495 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st | 0.50 | 42.0 | 3.62e-01 | 91.8% | 77.4% |
D2
high
residues 105-227
Domain cluster:
rep: P0_An_pond3_S8_coassembly_k141_133253_prodigal-single.1__X__X__00015__D107-209