←Back to structures
SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00349
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00349
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-46
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.72 | 56.0 | 3.27e-01 | 100.0% | 10.9% |
| 4mtdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 57.0 | 4.57e-01 | 100.0% | 96.6% |
| 2w00A02 | 3.90.640.50 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.68 | 54.0 | 4.55e-01 | 92.5% | 60.3% |
| 1ni5A02 | 1.20.59.20 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › | 0.67 | 52.0 | 4.11e-01 | 95.0% | 40.7% |
| 5k7fA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 47.0 | 4.69e-01 | 87.5% | 75.6% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 56.0 | 4.89e-01 | 100.0% | 67.7% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.64 | 53.0 | 4.27e-01 | 100.0% | 70.9% |
| 3b40A02 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.63 | 53.0 | 4.75e-01 | 97.5% | 98.3% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 53.0 | 4.47e-01 | 100.0% | 94.1% |
| 3afhA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.60 | 50.0 | 4.71e-01 | 95.0% | 80.0% |
| 3oa8A01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.58 | 48.0 | 3.51e-01 | 100.0% | 36.4% |
| 3tw6A06 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 39.0 | 3.78e-01 | 82.5% | 61.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5023893 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.72 | 58.0 | 3.56e-01 | 100.0% | 15.3% |
| 3510488 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.67 | 53.0 | 4.10e-01 | 95.0% | 38.9% |
| 3249392 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 51.0 | 4.44e-01 | 95.0% | 60.0% |
| 4028941 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.63 | 52.0 | 4.36e-01 | 100.0% | 54.3% |
| 159498 | 108.1.1.41 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › MTIP_N | 0.63 | 48.0 | 4.65e-01 | 90.0% | 87.5% |
| 3611747 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.61 | 53.0 | 4.84e-01 | 100.0% | 100.0% |
| 3734773 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 45.0 | 4.52e-01 | 95.0% | 87.5% |
| 3470194 | 148.1.3.17 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid | 0.57 | 48.0 | 3.57e-01 | 97.5% | 36.2% |
| 3806502 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.57 | 39.0 | 4.16e-01 | 72.5% | 82.9% |
D2
high
residues 57-187
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ke9A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 25.0 | 3.28e-01 | 96.2% | 80.6% |
| 1tg0A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 25.0 | 3.45e-01 | 80.2% | 92.4% |
| 1vf7F01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.50 | 31.0 | 3.48e-01 | 100.0% | 79.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3389940 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.62 | 34.0 | 3.96e-01 | 87.0% | 75.6% |
| 3938415 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.60 | 28.0 | 3.94e-01 | 71.8% | 90.8% |
| 3575253 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.56 | 27.0 | 3.61e-01 | 71.8% | 85.7% |
| 3557677 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.56 | 25.0 | 3.30e-01 | 96.2% | 77.1% |
| 3434094 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.55 | 32.0 | 3.71e-01 | 80.2% | 78.9% |
| 3210707 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.54 | 24.0 | 3.51e-01 | 71.0% | 93.3% |
| 4537356 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.53 | 23.0 | 3.41e-01 | 96.2% | 91.7% |
| 3631298 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.51 | 24.0 | 3.19e-01 | 78.6% | 80.0% |
| 3705404 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.51 | 39.0 | 3.18e-01 | 80.9% | 99.2% |