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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00360
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00360
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-51_68-137
Domain cluster:
rep: MN695334.1__QGT54496.1__b3_0254__00238__D2-120
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08302.17 best | tRNA_lig_CPD | 25.0 | 1.80e-05 | 81.3% | 23.2% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wojA00 | 3.90.1740.10 | Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily | 0.89 | 84.0 | 6.55e-01 | 100.0% | 97.1% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.64 | 58.0 | 4.86e-01 | 100.0% | 86.4% |
| 4rs2A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 40.0 | 3.44e-01 | 85.0% | 92.8% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3744887 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.88 | 82.0 | 6.94e-01 | 98.1% | 97.6% |
| 3480974 | 264.1.1.3 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › CNPase | 0.88 | 82.0 | 6.17e-01 | 100.0% | 98.3% |
| 3176561 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.87 | 82.0 | 6.43e-01 | 98.1% | 97.0% |
| 3608079 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.87 | 83.0 | 7.40e-01 | 99.1% | 96.4% |
| 3497100 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.87 | 82.0 | 6.08e-01 | 100.0% | 96.7% |
| 3835887 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.86 | 80.0 | 7.10e-01 | 99.1% | 98.7% |
| 3203190 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.86 | 82.0 | 7.26e-01 | 100.0% | 93.1% |
| 3709497 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.86 | 82.0 | 7.27e-01 | 100.0% | 93.8% |
| 3264230 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.85 | 81.0 | 7.42e-01 | 99.1% | 97.0% |
| 3781535 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.85 | 80.0 | 6.46e-01 | 99.1% | 98.4% |
| 3673377 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.84 | 77.0 | 6.87e-01 | 97.2% | 98.6% |
| 3611297 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.83 | 78.0 | 6.93e-01 | 100.0% | 95.1% |
| 3591493 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.77 | 71.0 | 6.37e-01 | 100.0% | 95.2% |
| 5036038 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.65 | 59.0 | 4.98e-01 | 100.0% | 88.3% |
| None | — | 0.64 | 59.0 | 4.96e-01 | 100.0% | 88.0% | |
| 3251551 | 264.1.1.15 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › DUF1045 | 0.62 | 56.0 | 4.44e-01 | 100.0% | 85.1% |