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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00415
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00415
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-84
Domain cluster:
rep: PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00144__D29-85
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7razA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 41.0 | 3.67e-01 | 78.7% | 40.0% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 41.0 | 4.46e-01 | 82.0% | 70.0% |
| 3mzkB01 | 6.20.50.30 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.68 | 36.0 | 4.34e-01 | 72.1% | 81.6% |
| 1sfnA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.65 | 55.0 | 3.75e-01 | 100.0% | 67.8% |
| 1sq4A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 43.0 | 3.48e-01 | 72.1% | 58.7% |
| 1ywkC00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 52.0 | 3.53e-01 | 100.0% | 67.6% |
| 2k5wA00 | 2.40.50.480 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 | 0.58 | 49.0 | 4.12e-01 | 100.0% | 87.4% |
| 4aqlA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.57 | 47.0 | 3.72e-01 | 98.4% | 43.5% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 41.0 | 3.52e-01 | 100.0% | 45.8% |
| 7pthC01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.55 | 44.0 | 2.64e-01 | 90.2% | 84.2% |
| 4rd7A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 41.0 | 3.34e-01 | 85.2% | 50.4% |
| 2vg9A00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.53 | 37.0 | 2.59e-01 | 73.8% | 95.9% |
| 6ks6G01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.52 | 43.0 | 2.94e-01 | 100.0% | 60.0% |
| 6vhyC01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.51 | 40.0 | 2.56e-01 | 93.4% | 87.1% |
| 1fguB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 38.0 | 3.01e-01 | 82.0% | 39.5% |
| 5by5A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 38.0 | 3.18e-01 | 85.2% | 47.0% |
| 3cewA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 39.0 | 3.30e-01 | 88.5% | 55.5% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3660244 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.71 | 43.0 | 4.05e-01 | 83.6% | 49.3% |
| 1396630 | 10.12.1.22 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI | 0.64 | 44.0 | 3.34e-01 | 72.1% | 47.0% |
| 3968004 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.64 | 51.0 | 3.87e-01 | 90.2% | 67.1% |
| 4032989 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.63 | 50.0 | 3.93e-01 | 90.2% | 72.9% |
| 4270486 | 10.12.1.22 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI | 0.62 | 52.0 | 3.50e-01 | 100.0% | 64.4% |
| 4004354 | 10.12.1.115 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 | 0.62 | 53.0 | 4.09e-01 | 95.1% | 82.2% |
| 4335239 | 10.12.1.22 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI | 0.61 | 52.0 | 3.44e-01 | 100.0% | 65.6% |
| 3683145 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.61 | 41.0 | 3.42e-01 | 73.8% | 39.1% |
| 3974066 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.61 | 50.0 | 3.83e-01 | 93.4% | 76.7% |
| 4007792 | 10.12.1.115 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 | 0.60 | 51.0 | 3.93e-01 | 93.4% | 80.7% |
| 3387563 | 10.12.1.64 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ExsA_N | 0.60 | 50.0 | 3.61e-01 | 95.1% | 65.0% |
| 2006888 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.60 | 39.0 | 3.59e-01 | 72.1% | 49.4% |
| 4007473 | 10.12.1.115 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 | 0.60 | 49.0 | 3.86e-01 | 93.4% | 82.2% |
| 2723972 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.59 | 37.0 | 3.45e-01 | 100.0% | 48.1% |
| 3970143 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.59 | 48.0 | 3.75e-01 | 93.4% | 67.1% |
| 3967079 | 10.12.1.75 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding_2 | 0.59 | 48.0 | 3.39e-01 | 93.4% | 53.2% |
| 3280572 | 10.12.1.75 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding_2 | 0.58 | 46.0 | 3.30e-01 | 90.2% | 50.7% |
| 1240179 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.57 | 47.0 | 4.60e-01 | 98.4% | 83.8% |
| 4256769 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.57 | 47.0 | 4.05e-01 | 98.4% | 57.0% |
| 4010514 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.57 | 46.0 | 3.40e-01 | 93.4% | 64.6% |
| 3912697 | 292.2.1.3 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB2 | 0.56 | 41.0 | 3.42e-01 | 98.4% | 44.5% |
| 3590244 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.55 | 45.0 | 3.36e-01 | 95.1% | 67.6% |
| 5048934 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.55 | 41.0 | 3.44e-01 | 80.3% | 48.5% |
| 4957512 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.54 | 40.0 | 3.43e-01 | 80.3% | 50.0% |
| 3810129 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.53 | 38.0 | 3.76e-01 | 75.4% | 81.5% |
| 1389760 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.53 | 41.0 | 3.34e-01 | 85.2% | 50.4% |
| 3923675 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.53 | 46.0 | 4.53e-01 | 96.7% | 93.8% |
| 4995691 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.53 | 39.0 | 3.39e-01 | 82.0% | 56.0% |
| 3678038 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.53 | 40.0 | 3.78e-01 | 83.6% | 73.3% |
| 4955697 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.52 | 38.0 | 3.25e-01 | 80.3% | 49.5% |
| 3271441 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.52 | 40.0 | 4.22e-01 | 98.4% | 96.4% |
| 5053030 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.51 | 38.0 | 3.52e-01 | 80.3% | 65.0% |
| 4264620 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.51 | 40.0 | 3.21e-01 | 86.9% | 43.3% |
| 3463608 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.51 | 37.0 | 3.61e-01 | 80.3% | 71.4% |