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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00428
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00428
Identity
- Kingdom:
- phage
Quality
51.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 135-338
D2
medium
residues 374-433
D3
medium
residues 434-507
D4
medium
residues 508-592
D5
medium
residues 593-735
Domain cluster:
rep: GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00438__D427-454_512-639
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5wy8B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 39.0 | 4.30e-01 | 99.3% | 74.1% |
| 1wmdA02 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 47.0 | 5.20e-01 | 96.5% | 91.5% |
| 8hhvA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.64 | 43.0 | 4.66e-01 | 100.0% | 79.5% |
| 8owfA01 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 40.0 | 4.49e-01 | 99.3% | 82.0% |
| 2e8yA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 38.0 | 4.43e-01 | 93.7% | 84.2% |
| 3ndzE00 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 40.0 | 4.44e-01 | 99.3% | 83.2% |
| 1oh4A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 47.0 | 4.43e-01 | 99.3% | 66.7% |
| 1mw7A03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.61 | 32.0 | 4.25e-01 | 86.7% | 96.0% |
| 2c2nA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.61 | 33.0 | 4.41e-01 | 86.7% | 100.0% |
| 1pmhX00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 48.0 | 4.38e-01 | 99.3% | 69.4% |
| 4umsA01 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 41.0 | 4.14e-01 | 100.0% | 76.1% |
| 3cu7A12 | 2.60.40.690 | Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain | 0.56 | 39.0 | 3.98e-01 | 96.5% | 73.2% |
| 5jpnC01 | 2.60.40.690 | Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain | 0.56 | 39.0 | 4.02e-01 | 100.0% | 75.9% |
| 2bpa200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 44.0 | 4.09e-01 | 100.0% | 67.4% |
| 3lqcA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 43.0 | 4.22e-01 | 100.0% | 76.2% |
| 2o30A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 32.0 | 4.05e-01 | 79.7% | 98.8% |
| 6sl4A00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.55 | 44.0 | 4.40e-01 | 95.8% | 82.7% |
| 1g1kA00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 40.0 | 4.06e-01 | 100.0% | 76.2% |
| 2x9zA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 42.0 | 4.19e-01 | 100.0% | 77.9% |
| 5hbaA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 41.0 | 4.28e-01 | 95.8% | 85.0% |
| 1gff200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 43.0 | 4.06e-01 | 100.0% | 68.4% |
| 3qdhA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 44.0 | 4.27e-01 | 100.0% | 80.1% |
| 1g43A00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.53 | 45.0 | 4.38e-01 | 96.5% | 82.5% |
| 2b39A10 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 34.0 | 3.76e-01 | 100.0% | 79.3% |
| 1m06G00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 43.0 | 3.93e-01 | 100.0% | 65.2% |
| 5gxxA02 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.52 | 45.0 | 4.38e-01 | 96.5% | 85.4% |
| 1g87A02 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.52 | 45.0 | 4.37e-01 | 96.5% | 85.5% |
| 1pk6C00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 38.0 | 4.01e-01 | 96.5% | 85.3% |
| 2y7lA02 | 2.60.40.2430 | Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain | 0.51 | 39.0 | 3.87e-01 | 100.0% | 75.5% |
| 8begA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 4.22e-01 | 100.0% | 82.6% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 4.32e-01 | 100.0% | 86.5% |
| 3jb4C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 44.0 | 3.72e-01 | 100.0% | 56.0% |
| 4oumA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 38.0 | 3.97e-01 | 96.5% | 84.8% |
| 4qpiB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 46.0 | 3.96e-01 | 100.0% | 64.5% |
| 1wvqA00 | 3.40.1520.10 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like | 0.50 | 34.0 | 3.31e-01 | 86.7% | 60.7% |
| 1yi9A01 | 2.60.120.310 | Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain | 0.50 | 40.0 | 3.92e-01 | 100.0% | 78.2% |
| 4kx7A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.50 | 42.0 | 3.65e-01 | 97.9% | 58.9% |
| 3vbhC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 45.0 | 3.82e-01 | 100.0% | 60.7% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944076 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.69 | 48.0 | 5.17e-01 | 96.5% | 84.2% |
| 3421268 | 10.32.1.38 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like | 0.66 | 43.0 | 5.14e-01 | 99.3% | 97.9% |
| 4103741 | 10.32.1.19 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC | 0.64 | 42.0 | 4.82e-01 | 96.5% | 89.5% |
| 4324122 | 10.32.1.18 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C | 0.64 | 50.0 | 4.56e-01 | 100.0% | 62.7% |
| 3879285 | 10.4.1.23 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CDCP1_CUB_6 | 0.64 | 41.0 | 4.41e-01 | 97.2% | 75.0% |
| 3707942 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.63 | 43.0 | 4.74e-01 | 100.0% | 86.1% |
| 3398159 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.62 | 46.0 | 4.76e-01 | 100.0% | 82.2% |
| 3486154 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.61 | 43.0 | 4.39e-01 | 96.5% | 74.3% |
| 3978664 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.60 | 42.0 | 4.60e-01 | 96.5% | 88.7% |
| 4946917 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.60 | 40.0 | 4.27e-01 | 99.3% | 79.2% |
| 3398713 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 44.0 | 4.56e-01 | 99.3% | 81.5% |
| 4013458 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.59 | 46.0 | 4.93e-01 | 100.0% | 96.7% |
| 5056154 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.59 | 40.0 | 3.91e-01 | 97.9% | 62.6% |
| 3523254 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.58 | 47.0 | 4.36e-01 | 100.0% | 67.8% |
| 4945616 | 11.1.1.1399 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF553 | 0.58 | 38.0 | 4.17e-01 | 97.2% | 81.7% |
| 3567758 | 10.32.1.7 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › XRCC1_N | 0.58 | 44.0 | 4.41e-01 | 100.0% | 76.7% |
| 1151 | 10.32.1.36 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM27 | 0.57 | 48.0 | 4.38e-01 | 99.3% | 69.4% |
| 3270883 | 10.32.1.7 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › XRCC1_N | 0.57 | 43.0 | 4.22e-01 | 100.0% | 72.3% |
| 3554183 | 10.32.1.7 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › XRCC1_N | 0.57 | 44.0 | 4.32e-01 | 100.0% | 74.8% |
| 4968615 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.57 | 45.0 | 4.59e-01 | 100.0% | 88.9% |
| 3966295 | 319.3.1.0 ↗ | beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ | 0.57 | 31.0 | 3.56e-01 | 89.5% | 72.0% |
| 3493007 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 43.0 | 4.24e-01 | 100.0% | 74.8% |
| 4280499 | 929.1.1.3 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin › PCSK9_C3 | 0.56 | 32.0 | 4.04e-01 | 90.2% | 100.0% |
| 2859191 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.56 | 45.0 | 4.10e-01 | 100.0% | 65.1% |
| 5034784 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 50.0 | 4.47e-01 | 100.0% | 85.9% |
| 3520168 | 10.1.1.10 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM | 0.55 | 47.0 | 4.23e-01 | 100.0% | 67.2% |
| 1883 | 11.1.5.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Cohesin | 0.55 | 40.0 | 4.11e-01 | 100.0% | 78.0% |
| 5059640 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.54 | 40.0 | 4.15e-01 | 100.0% | 83.1% |
| 1868431 | 10.3.1.2 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q | 0.54 | 41.0 | 4.28e-01 | 95.8% | 85.0% |
| 3479980 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 40.0 | 4.06e-01 | 100.0% | 77.9% |
| 4308710 | 11.1.5.52 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sgo0707_N2 | 0.54 | 44.0 | 4.33e-01 | 100.0% | 81.3% |
| 4954390 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.54 | 42.0 | 4.12e-01 | 100.0% | 76.8% |
| 4339228 | 11.1.5.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_3 | 0.54 | 44.0 | 4.25e-01 | 96.5% | 78.8% |
| 2491349 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 4.29e-01 | 93.7% | 100.0% |
| 1193 | 10.2.1.27 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Phage_G | 0.53 | 43.0 | 3.93e-01 | 100.0% | 65.2% |
| 3479982 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.53 | 40.0 | 4.15e-01 | 96.5% | 86.9% |
| 4954385 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 43.0 | 4.09e-01 | 100.0% | 73.1% |
| 5043537 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.52 | 36.0 | 3.43e-01 | 97.9% | 56.7% |
| 4278178 | 10.32.1.192 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID | 0.51 | 43.0 | 4.06e-01 | 94.4% | 74.7% |
| 3491151 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.95e-01 | 100.0% | 78.0% |
| 1030918 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.51 | 31.0 | 3.04e-01 | 86.0% | 52.2% |
| 4606765 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.51 | 37.0 | 4.09e-01 | 90.9% | 97.3% |
| 3472007 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 44.0 | 4.41e-01 | 100.0% | 91.7% |
| 3893252 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.51 | 37.0 | 3.99e-01 | 93.0% | 93.0% |
| 1697855 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.51 | 44.0 | 3.72e-01 | 100.0% | 56.0% |
| 3593942 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 45.0 | 4.48e-01 | 99.3% | 98.0% |
| 1400716 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.51 | 46.0 | 3.96e-01 | 100.0% | 64.5% |
| 2389609 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.50 | 45.0 | 3.84e-01 | 100.0% | 64.9% |