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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00449
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00449
Identity
- Kingdom:
- phage
Quality
59.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 134-197
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vo9A01 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.85 | 75.0 | 5.84e-01 | 96.9% | 48.1% |
| 5t3dA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.64 | 47.0 | 3.46e-01 | 78.1% | 78.9% |
| 2l09A01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.62 | 42.0 | 4.53e-01 | 70.3% | 90.4% |
| 1mjtB01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.61 | 50.0 | 4.06e-01 | 93.8% | 80.6% |
| 7c1hB01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.60 | 43.0 | 3.27e-01 | 79.7% | 78.5% |
| 3dwgA01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 39.0 | 2.88e-01 | 71.9% | 40.3% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 41.0 | 3.06e-01 | 76.6% | 79.1% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.56 | 40.0 | 3.73e-01 | 79.7% | 88.4% |
| 5ib0A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 42.0 | 3.47e-01 | 89.1% | 85.4% |
| 2pusA05 | 1.10.1740.80 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.54 | 37.0 | 3.55e-01 | 73.4% | 76.2% |
| 1hh8A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 36.0 | 2.63e-01 | 81.2% | 24.0% |
| 1zs3A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 39.0 | 3.05e-01 | 90.6% | 90.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.84 | 76.0 | 5.69e-01 | 100.0% | 44.6% | |
| 3330992 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.69 | 48.0 | 4.53e-01 | 73.4% | 88.7% |
| 5071213 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.68 | 46.0 | 4.32e-01 | 71.9% | 97.5% |
| 3743101 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.65 | 47.0 | 4.55e-01 | 76.6% | 92.0% |
| 4140359 | 190.1.1.7 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › MATalpha_HMGbox | 0.65 | 44.0 | 3.36e-01 | 70.3% | 92.0% |
| 3456284 | 633.12.1.12 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › Complex1_LYR | 0.65 | 48.0 | 4.49e-01 | 79.7% | 83.7% |
| 4927987 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.64 | 45.0 | 2.91e-01 | 75.0% | 26.3% |
| 3232876 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.62 | 45.0 | 4.09e-01 | 79.7% | 91.6% |
| 4120431 | 190.1.1.7 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › MATalpha_HMGbox | 0.58 | 41.0 | 3.30e-01 | 75.0% | 63.1% |
| 4404541 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.58 | 46.0 | 2.94e-01 | 90.6% | 55.7% |
| 1701031 | 633.27.1.1 ↗ | alpha bundles › Bromodomain-like › Four-helical bundle in acetyl-CoA carboxylase › Four-helical bundle in acetyl-CoA carboxylase › ACC_central | 0.57 | 40.0 | 3.77e-01 | 76.6% | 83.1% |
| 5022743 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.56 | 45.0 | 2.96e-01 | 93.8% | 73.3% |
D2
medium
residues 198-292
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13539.12 best | Peptidase_M15_4 | 44.2 | 3.10e-11 | 73.7% | 95.6% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vo9A01 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.84 | 60.0 | 5.29e-01 | 77.9% | 52.6% |
| 4d0yA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.68 | 53.0 | 4.23e-01 | 83.2% | 49.5% |
| 2nw0A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 41.0 | 3.29e-01 | 81.1% | 98.4% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.53 | 39.0 | 3.59e-01 | 76.8% | 74.6% |
| 2krbA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 34.0 | 3.64e-01 | 80.0% | 76.5% |
| 1lh0B00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 36.0 | 2.82e-01 | 70.5% | 79.1% |
| 2fyfA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 34.0 | 3.31e-01 | 94.7% | 60.0% |
| 5ksdA04 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.51 | 37.0 | 3.17e-01 | 74.7% | 83.1% |
| 1kutB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 33.0 | 3.40e-01 | 83.2% | 69.7% |
| 6j6ga00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 32.0 | 3.43e-01 | 86.3% | 73.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3897288 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.59 | 40.0 | 4.06e-01 | 70.5% | 71.6% |
| 4990895 | 2002.1.1.414 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Wyosine_form | 0.55 | 42.0 | 2.99e-01 | 84.2% | 88.4% |
| 3208791 | 331.4.1.26 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › Med13_N | 0.55 | 44.0 | 3.12e-01 | 84.2% | 91.1% |
| 3470471 | 304.7.1.4 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › S8_pro-domain | 0.55 | 38.0 | 3.94e-01 | 87.4% | 80.0% |
| 3800183 | 7579.1.1.81 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Arb2 | 0.55 | 38.0 | 2.73e-01 | 71.6% | 93.2% |
| 3190324 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 37.0 | 4.01e-01 | 91.6% | 86.1% |
| 4958396 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.54 | 30.0 | 3.32e-01 | 86.3% | 68.0% |
| 3327785 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 33.0 | 3.23e-01 | 88.4% | 56.2% |
| 4026995 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.51 | 37.0 | 3.64e-01 | 84.2% | 68.6% |
| 4946337 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.51 | 35.0 | 2.81e-01 | 71.6% | 80.5% |
| 1151812 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 33.0 | 3.24e-01 | 94.7% | 58.3% |
D3
medium
residues 313-365
D4
medium
residues 366-416_439-539
Domain cluster:
rep: MT074142.1__QIG64493.1__DAC23_219__00215__D39-244