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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00475
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00475
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-125
Domain cluster:
rep: KX925554.1__APC46406.1__X__00144__D31-158
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23140.2 best | Gp80 | 142.6 | 1.30e-41 | 100.0% | 97.7% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w5eA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 32.0 | 3.81e-01 | 85.1% | 89.2% |
| 1ej8A00 | 2.60.40.200 | Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain | 0.55 | 43.0 | 4.15e-01 | 83.5% | 93.6% |
| 3mnmA00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.53 | 35.0 | 3.59e-01 | 82.6% | 69.6% |
| 2lmeA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.50 | 26.0 | 2.77e-01 | 95.0% | 53.3% |
| 1wnhA01 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 30.0 | 3.29e-01 | 83.5% | 71.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928608 | 3899.1.1.0 ↗ | beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 | 0.75 | 64.0 | 5.86e-01 | 100.0% | 70.4% |
| 4932865 | 3899.1.1.0 ↗ | beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 | 0.72 | 66.0 | 6.32e-01 | 100.0% | 85.7% |
| 3262851 | 11.1.3.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › Sod_Cu | 0.57 | 45.0 | 3.79e-01 | 83.5% | 80.0% |
| 5014956 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 37.0 | 3.49e-01 | 82.6% | 55.2% |
| 140559 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.53 | 35.0 | 3.59e-01 | 82.6% | 69.6% |
| 3894737 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.53 | 34.0 | 3.43e-01 | 82.6% | 62.1% |