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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00540

Bact-Vir

SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00540

Identity

Kingdom:
phage

Quality

74.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-172
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13177.13 best DNA_pol3_delta2 85.3 6.70e-24 91.8% 92.5%
PF00004.36 AAA 31.8 2.50e-07 79.0% 95.4%
D2 medium residues 177-236
PDB
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6vvoC02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.92 85.0 8.30e-01 100.0% 95.3%
1njgB01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.91 84.0 7.80e-01 100.0% 84.9%
3u60E02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.90 73.0 7.36e-01 85.0% 88.1%
3zh9B02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.90 83.0 7.85e-01 100.0% 91.4%
1a5tA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.89 56.0 6.75e-01 73.3% 97.5%
1iqpA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.89 83.0 8.10e-01 100.0% 98.4%
3bosA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.89 82.0 7.89e-01 100.0% 97.0%
1jqjD03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.88 80.0 7.03e-01 100.0% 73.3%
1sxjD02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.88 80.0 7.59e-01 100.0% 95.7%
3e46A02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.87 55.0 6.39e-01 75.0% 90.7%
1sxjE02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.86 80.0 7.80e-01 100.0% 93.8%
1sxjC02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.86 77.0 7.41e-01 100.0% 97.1%
2qhoD00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.85 57.0 6.26e-01 75.0% 85.7%
1wgnA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.85 57.0 5.68e-01 80.0% 66.7%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.85 76.0 6.82e-01 100.0% 80.7%
1hqcA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.85 76.0 7.02e-01 100.0% 88.2%
1ufzA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.84 61.0 6.27e-01 81.7% 79.3%
2dhyA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.84 60.0 5.80e-01 81.7% 67.2%
1sxjA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.84 78.0 7.25e-01 100.0% 97.2%
5vjhB02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.83 74.0 6.40e-01 100.0% 85.9%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.83 74.0 6.66e-01 100.0% 80.7%
2lbcA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.82 56.0 5.88e-01 83.3% 79.2%
1tr8A02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.81 50.0 5.96e-01 70.0% 97.4%
1vdlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.81 58.0 5.23e-01 81.7% 56.2%
3sykA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.81 71.0 6.24e-01 100.0% 92.2%
2yviA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.81 55.0 4.80e-01 75.0% 48.3%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.80 56.0 5.42e-01 80.0% 65.7%
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.80 63.0 5.11e-01 85.0% 54.5%
2g3qA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.80 52.0 5.89e-01 98.3% 93.0%
3lcvB01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.79 59.0 6.02e-01 80.0% 94.7%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.79 57.0 5.74e-01 83.3% 76.7%
2daiA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.79 57.0 5.08e-01 95.0% 55.4%
3hx3A01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.78 59.0 5.71e-01 81.7% 94.0%
2lvaA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.78 52.0 5.78e-01 78.3% 93.2%
6qs7C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.77 68.0 5.30e-01 100.0% 96.2%
1vegA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.77 54.0 5.98e-01 93.3% 100.0%
1vg5A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.77 55.0 5.11e-01 96.7% 61.6%
3ihpB05 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.76 57.0 5.95e-01 91.7% 88.9%
4ae4A00 1.20.120.1920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UBAP1 SOUBA domain 0.74 60.0 4.82e-01 100.0% 46.5%
7y11B01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.73 61.0 6.06e-01 91.7% 92.1%
4dbgB02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.73 54.0 5.45e-01 81.7% 85.2%
1olmC01 3.40.525.10 Alpha Beta › 3-Layer(aba) Sandwich › Phosphatidylinositol Transfer Protein Sec14p › CRAL-TRIO lipid binding domain 0.73 65.0 4.14e-01 100.0% 60.8%
1wivA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.73 51.0 4.84e-01 90.0% 61.6%
2zc2A00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.71 61.0 5.71e-01 96.7% 92.0%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.70 49.0 4.40e-01 78.3% 51.7%
2jujA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 47.0 4.83e-01 83.3% 85.7%
5x68A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 53.0 3.34e-01 100.0% 92.6%
4j31A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 52.0 3.29e-01 100.0% 92.3%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 38.0 3.56e-01 70.0% 67.9%
7xokN01 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.57 42.0 4.38e-01 100.0% 94.2%
3w0lD01 1.10.8.1080 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 47.0 4.11e-01 100.0% 58.4%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.55 41.0 4.23e-01 83.3% 94.5%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.88e-01 75.0% 89.1%
1serA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.53 35.0 3.73e-01 100.0% 79.2%
2ze7A02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.52 36.0 3.11e-01 75.0% 72.5%
1d3yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 4.03e-01 90.0% 91.5%
4i3vA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.50 42.0 2.81e-01 100.0% 45.0%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3793159 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.98 93.0 9.05e-01 100.0% 95.4%
3994437 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.97 93.0 9.03e-01 100.0% 96.9%
3621809 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.97 91.0 8.58e-01 98.3% 87.1%
5027108 148.1.3.222 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27254 0.97 89.0 8.95e-01 96.7% 98.3%
4449599 148.1.3.47 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid 0.96 90.0 8.51e-01 100.0% 88.6%
3440546 148.1.3.47 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid 0.96 90.0 8.05e-01 100.0% 76.2%
3387061 148.1.3.47 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid 0.95 90.0 8.71e-01 100.0% 95.4%
4444764 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.95 89.0 8.42e-01 100.0% 87.1%
4927213 148.1.3.47 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid 0.95 89.0 8.90e-01 100.0% 98.3%
3950635 148.1.3.47 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid 0.95 89.0 8.41e-01 100.0% 90.0%
3606743 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.95 89.0 8.16e-01 100.0% 81.3%
4965689 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.95 88.0 8.82e-01 98.3% 100.0%
5082447 148.1.3.47 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid 0.95 89.0 8.14e-01 100.0% 82.7%
4934350 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.94 88.0 8.59e-01 100.0% 93.8%
3619511 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.94 89.0 8.61e-01 100.0% 93.8%
5028605 148.1.3.47 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid 0.94 87.0 8.71e-01 100.0% 98.3%
4994187 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.94 88.0 8.55e-01 100.0% 93.8%
4576684 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.94 88.0 8.29e-01 100.0% 87.1%
4029750 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.94 87.0 8.50e-01 100.0% 93.8%
5040775 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.93 86.0 8.65e-01 98.3% 100.0%
3885028 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.93 76.0 6.58e-01 85.0% 61.2%
3742104 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.93 88.0 8.83e-01 100.0% 100.0%
4474463 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.93 87.0 8.25e-01 100.0% 87.1%
5006918 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.93 83.0 8.39e-01 95.0% 96.7%
3240928 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.93 87.0 8.46e-01 100.0% 100.0%
4948160 148.1.3.405 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rep_fac_C 0.93 87.0 8.47e-01 100.0% 93.8%
3164804 148.1.3.47 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid 0.93 87.0 8.18e-01 100.0% 88.6%
3865128 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.93 87.0 8.44e-01 100.0% 95.4%
5036744 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.93 86.0 8.16e-01 100.0% 87.1%
3269672 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.93 87.0 8.43e-01 100.0% 98.5%
4160285 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.93 84.0 8.49e-01 98.3% 96.7%
4947827 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.93 84.0 8.47e-01 100.0% 96.7%
4993112 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.93 87.0 6.51e-01 100.0% 47.7%
4980405 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.92 86.0 8.36e-01 100.0% 93.8%
3297296 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.92 74.0 7.40e-01 83.3% 100.0%
3510515 148.1.3.47 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid 0.92 85.0 8.07e-01 100.0% 90.0%
3893638 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.92 85.0 8.29e-01 100.0% 93.8%
4977023 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.92 86.0 8.11e-01 100.0% 85.7%
3932276 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.92 85.0 8.28e-01 100.0% 93.8%
3653509 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.92 84.0 8.23e-01 100.0% 93.8%
3466646 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.91 84.0 7.78e-01 100.0% 81.3%
4528166 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.91 85.0 8.27e-01 100.0% 92.3%
3802314 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.91 84.0 7.77e-01 100.0% 92.0%
3312436 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.91 85.0 7.99e-01 100.0% 87.1%
3503914 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.91 85.0 8.26e-01 100.0% 93.8%
5054243 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.91 84.0 8.21e-01 100.0% 93.8%
4069825 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.91 84.0 8.20e-01 100.0% 93.8%
3785772 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.91 84.0 7.97e-01 100.0% 88.6%
5058220 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.91 82.0 8.20e-01 96.7% 98.3%
3191809 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.91 84.0 6.72e-01 100.0% 98.2%
3388508 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.91 84.0 8.15e-01 100.0% 93.8%
4199378 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.91 84.0 8.16e-01 100.0% 95.4%
4889454 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.90 80.0 7.56e-01 95.0% 91.4%
5003869 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.90 84.0 8.16e-01 100.0% 96.9%
3688793 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.90 83.0 6.66e-01 100.0% 64.5%
3720295 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.90 83.0 6.88e-01 100.0% 100.0%
3520054 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.90 83.0 8.10e-01 100.0% 98.5%
4016413 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.90 83.0 7.30e-01 100.0% 94.1%
3267723 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.90 83.0 7.86e-01 100.0% 87.1%
3519403 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.90 83.0 8.08e-01 100.0% 92.3%
4078005 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.90 83.0 8.40e-01 100.0% 100.0%
4966288 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.90 83.0 8.06e-01 100.0% 95.4%
3247646 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.90 82.0 8.03e-01 100.0% 93.8%
3724955 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.90 82.0 8.00e-01 100.0% 90.8%
4462629 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.90 83.0 8.08e-01 100.0% 93.8%
4206573 148.1.3.39 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › HolB_lid 0.90 64.0 7.36e-01 95.0% 100.0%
3673342 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.89 82.0 8.02e-01 100.0% 90.8%
3598800 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.89 82.0 6.70e-01 100.0% 86.7%
3387071 148.1.3.222 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27254 0.89 80.0 8.03e-01 98.3% 96.7%
3821228 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.89 82.0 7.99e-01 100.0% 95.4%
3484089 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.89 82.0 7.34e-01 100.0% 90.0%
4017701 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.89 81.0 7.14e-01 100.0% 92.9%
5062561 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.88 81.0 7.92e-01 100.0% 92.3%
4028941 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.88 82.0 7.78e-01 100.0% 92.9%
3728370 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.88 80.0 7.08e-01 100.0% 92.9%
3987908 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.88 80.0 7.79e-01 100.0% 96.9%
3174002 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.88 76.0 7.96e-01 95.0% 100.0%
1762064 148.1.3.34 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Gp44_lid 0.87 81.0 6.72e-01 100.0% 63.3%
3407603 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.87 82.0 8.24e-01 100.0% 98.3%
3738684 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.87 80.0 8.02e-01 100.0% 100.0%
3482017 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.87 80.0 7.39e-01 100.0% 96.0%
3699805 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.87 79.0 7.52e-01 100.0% 94.3%
3169918 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.86 80.0 7.35e-01 98.3% 98.7%
3893613 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.86 79.0 6.57e-01 100.0% 62.0%
5077867 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.86 77.0 4.92e-01 100.0% 22.7%
3742139 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.86 79.0 7.72e-01 100.0% 95.4%
3611993 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.86 78.0 7.40e-01 98.3% 100.0%
4931896 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.86 78.0 7.59e-01 100.0% 95.4%
3240015 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.86 80.0 7.81e-01 100.0% 95.4%
3840044 2004.1.1.995 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27254 0.86 76.0 7.63e-01 100.0% 96.7%
3600819 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.86 66.0 6.62e-01 100.0% 81.7%
4204294 148.1.3.21 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 0.86 76.0 7.11e-01 100.0% 88.0%
4045986 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.85 77.0 7.13e-01 100.0% 96.0%
3537579 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.85 77.0 7.16e-01 100.0% 93.3%
4003956 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.85 74.0 7.74e-01 95.0% 100.0%
4541765 148.1.3.222 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27254 0.85 76.0 7.45e-01 100.0% 93.8%
4932414 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.84 73.0 7.33e-01 98.3% 95.0%
3337773 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.82 76.0 6.84e-01 100.0% 85.0%
3287188 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 66.0 6.44e-01 98.3% 92.3%
3638311 103.1.1.77 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › Rap1_C 0.72 55.0 5.37e-01 100.0% 76.9%
D3 medium residues 238-350
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.82 71.0 6.89e-01 92.9% 100.0%
1jr3C02 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.81 72.0 7.05e-01 95.6% 97.5%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.61 41.0 4.40e-01 92.0% 79.6%
7qoaA01 1.10.4160.10 Mainly Alpha › Orthogonal Bundle › Hydantoin permease › Hydantoin permease 0.59 44.0 3.03e-01 76.1% 77.9%
3rrcB01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.59 47.0 4.21e-01 85.8% 65.8%
4kk2B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.58 41.0 2.91e-01 73.5% 56.0%
1br2A03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.58 35.0 3.74e-01 84.1% 70.5%
2jexA01 1.10.287.30 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 0.57 44.0 4.72e-01 86.7% 95.8%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 27.0 2.63e-01 95.6% 38.2%
4nqiD00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.54 38.0 2.97e-01 71.7% 74.6%
3e7qA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 45.0 3.76e-01 95.6% 64.9%
2q12A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.52 36.0 2.86e-01 71.7% 70.7%
3lsjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 45.0 4.16e-01 97.3% 88.2%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 44.0 3.25e-01 94.7% 34.0%
8gr7A01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 44.0 3.30e-01 97.3% 50.5%
5c4yA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 44.0 4.17e-01 95.6% 94.9%
8jpdG01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.51 35.0 3.27e-01 86.7% 53.8%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 37.0 3.05e-01 76.1% 66.4%
2gbbB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.51 39.0 3.50e-01 80.5% 100.0%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.51 37.0 3.58e-01 75.2% 95.2%
4yonA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.51 35.0 2.89e-01 71.7% 44.0%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 43.0 4.17e-01 96.5% 90.9%
3hl6A02 1.20.58.700 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 35.0 3.55e-01 90.3% 70.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3510536 138.1.1.5 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_gamma3 0.83 73.0 7.18e-01 93.8% 94.2%
3290025 138.1.1.0 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.77 68.0 5.74e-01 95.6% 98.4%
3387070 138.1.1.20 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › PF30817 0.72 63.0 6.15e-01 95.6% 100.0%
4024875 4250.1.1.1 alpha bundles › Duffy-binding-like domain, N-terminal subdomain › Duffy-binding-like domain, N-terminal subdomain › Duffy-binding-like domain, N-terminal subdomain › Duffy_binding 0.60 46.0 4.03e-01 82.3% 68.2%
3929410 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 50.0 3.42e-01 100.0% 92.1%
4994869 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 37.0 3.67e-01 80.5% 67.5%
4234961 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 43.0 4.29e-01 89.4% 86.7%
3962643 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.52 41.0 3.71e-01 85.8% 70.6%
3290489 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.52 42.0 4.23e-01 88.5% 100.0%
4031458 191.1.1.12 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_8 0.52 42.0 4.18e-01 90.3% 99.2%
3186015 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 35.0 2.88e-01 71.7% 76.8%
3265013 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 38.0 3.11e-01 79.6% 93.0%
2875706 109.4.1.1613 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, ANAPC3, TPR_8 0.51 35.0 3.71e-01 99.1% 79.8%