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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00584
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00584
Identity
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-71
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ebdA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.68 | 34.0 | 2.71e-01 | 90.8% | 25.6% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.66 | 43.0 | 4.32e-01 | 100.0% | 65.7% |
| 4ytlA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 33.0 | 3.72e-01 | 84.6% | 62.0% |
| 3lm2A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 43.0 | 3.83e-01 | 100.0% | 46.4% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.63 | 54.0 | 4.71e-01 | 100.0% | 96.2% |
| 1df0A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 37.0 | 3.28e-01 | 87.7% | 40.2% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 45.0 | 4.58e-01 | 98.5% | 78.1% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 30.0 | 3.39e-01 | 80.0% | 61.7% |
| 3a54A01 | 2.40.50.340 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 42.0 | 3.80e-01 | 98.5% | 54.4% |
| 4fo0A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 49.0 | 3.72e-01 | 95.4% | 38.0% |
| 4ijaA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 47.0 | 3.75e-01 | 95.4% | 71.3% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.57 | 40.0 | 4.18e-01 | 96.9% | 82.5% |
| 3zm6A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.57 | 41.0 | 2.83e-01 | 98.5% | 22.0% |
| 2nnwA01 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.57 | 44.0 | 3.65e-01 | 100.0% | 45.9% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 48.0 | 4.06e-01 | 100.0% | 87.1% |
| 1fblA02 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.56 | 46.0 | 3.32e-01 | 92.3% | 34.6% |
| 2cqoA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 48.0 | 4.32e-01 | 98.5% | 69.6% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 37.0 | 3.26e-01 | 100.0% | 46.9% |
| 1flcB00 | 3.90.20.10 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › | 0.54 | 45.0 | 3.50e-01 | 98.5% | 89.5% |
| 4ioyX02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 39.0 | 3.24e-01 | 87.7% | 43.5% |
| 2j3tD01 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 45.0 | 3.66e-01 | 100.0% | 99.3% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 33.0 | 3.43e-01 | 100.0% | 65.6% |
| 4p78C00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.53 | 36.0 | 3.67e-01 | 100.0% | 71.2% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 37.0 | 3.51e-01 | 76.9% | 61.4% |
| 3wxmB02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.52 | 41.0 | 3.48e-01 | 93.8% | 49.2% |
| 1rwiA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 42.0 | 2.85e-01 | 93.8% | 23.4% |
| 6yleA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 44.0 | 2.77e-01 | 100.0% | 66.1% |
| 1kvkA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.51 | 40.0 | 2.90e-01 | 92.3% | 76.5% |
| 1tvzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 35.0 | 2.80e-01 | 73.8% | 87.8% |
| 2qx2A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.51 | 41.0 | 2.71e-01 | 95.4% | 49.4% |
| 4jhyA00 | 3.30.530.80 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.50 | 41.0 | 3.30e-01 | 100.0% | 97.4% |
| 5xbfA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 36.0 | 3.29e-01 | 89.2% | 56.8% |
| 7oode01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.50 | 44.0 | 4.34e-01 | 100.0% | 100.0% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 40.0 | 2.77e-01 | 96.9% | 39.4% |
| 7t8tA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 37.0 | 3.04e-01 | 83.1% | 48.1% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5079023 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 38.0 | 4.46e-01 | 89.2% | 75.6% |
| 4995072 | 101.41.1.0 ↗ | alpha arrays › HTH › MRB1590 C-terminal domain › MRB1590 C-terminal domain | 0.68 | 49.0 | 4.27e-01 | 95.4% | 50.0% |
| 5047657 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 41.0 | 4.44e-01 | 100.0% | 72.7% |
| 3386077 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.67 | 42.0 | 4.83e-01 | 100.0% | 91.1% |
| 5060461 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 39.0 | 3.76e-01 | 89.2% | 52.0% |
| 3524696 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.66 | 50.0 | 3.72e-01 | 83.1% | 55.3% |
| 3890147 | 633.23.1.33 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin, GSG-1 | 0.65 | 52.0 | 3.69e-01 | 89.2% | 52.9% |
| 3600254 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.64 | 53.0 | 3.81e-01 | 90.8% | 64.9% |
| 1489902 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.63 | 54.0 | 4.71e-01 | 100.0% | 96.2% |
| 5025079 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 36.0 | 3.84e-01 | 84.6% | 65.5% |
| 4579534 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.61 | 44.0 | 4.49e-01 | 98.5% | 76.9% |
| 4582456 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.61 | 45.0 | 4.42e-01 | 98.5% | 72.9% |
| 3736764 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.61 | 53.0 | 3.86e-01 | 98.5% | 40.6% |
| 4021643 | 719.2.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like | 0.60 | 52.0 | 4.53e-01 | 100.0% | 92.4% |
| 3648115 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.60 | 51.0 | 4.12e-01 | 100.0% | 88.9% |
| 3992398 | 220.1.1.44 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N | 0.59 | 39.0 | 3.23e-01 | 89.2% | 38.3% |
| 3521876 | 5.1.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin | 0.59 | 46.0 | 3.27e-01 | 86.2% | 30.2% |
| 4990252 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 44.0 | 4.29e-01 | 100.0% | 74.3% |
| 5004113 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.59 | 38.0 | 3.70e-01 | 95.4% | 58.7% |
| 3509753 | 573.1.1.0 ↗ | alpha duplicates or obligate multimers › Soluble domain of poliovirus core protein 3a › Soluble domain of poliovirus core protein 3a › Soluble domain of poliovirus core protein 3a | 0.58 | 32.0 | 3.75e-01 | 83.1% | 84.6% |
| 3350473 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.58 | 35.0 | 3.46e-01 | 89.2% | 55.7% |
| 4665972 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.58 | 50.0 | 3.17e-01 | 100.0% | 30.7% |
| 4934840 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 46.0 | 3.77e-01 | 90.8% | 95.2% |
| 5052919 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 47.0 | 3.75e-01 | 100.0% | 90.0% |
| 4986259 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.56 | 50.0 | 3.54e-01 | 100.0% | 35.7% |
| 3942961 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 41.0 | 3.84e-01 | 95.4% | 62.5% |
| 3910728 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.56 | 39.0 | 3.04e-01 | 87.7% | 31.0% |
| 3596700 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.56 | 45.0 | 3.31e-01 | 95.4% | 77.0% |
| 4104975 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.56 | 48.0 | 3.03e-01 | 100.0% | 30.3% |
| 4564673 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.56 | 48.0 | 3.05e-01 | 100.0% | 30.0% |
| 4508199 | 220.1.1.242 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › EbsA | 0.56 | 40.0 | 3.97e-01 | 93.8% | 71.4% |
| 3902541 | 319.1.1.5 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS | 0.55 | 37.0 | 3.42e-01 | 92.3% | 52.9% |
| 3345737 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.54 | 47.0 | 3.03e-01 | 98.5% | 21.6% |
| 3786078 | 109.4.1.1764 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 | 0.54 | 40.0 | 2.36e-01 | 78.5% | 16.4% |
| 2390755 | 319.1.1.5 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS | 0.53 | 35.0 | 3.21e-01 | 95.4% | 50.0% |
| 3244220 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.53 | 42.0 | 2.89e-01 | 84.6% | 36.7% |
| 5024527 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.53 | 45.0 | 4.04e-01 | 98.5% | 76.8% |
| 4973804 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 39.0 | 3.78e-01 | 95.4% | 69.3% |
| 4626818 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.52 | 41.0 | 3.49e-01 | 84.6% | 60.0% |
| 3797728 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 38.0 | 3.53e-01 | 93.8% | 60.0% |
| 4003604 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 37.0 | 3.22e-01 | 76.9% | 58.1% |
| 3509508 | 220.1.1.44 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N | 0.52 | 38.0 | 3.40e-01 | 93.8% | 54.7% |
| 4367650 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 40.0 | 3.78e-01 | 100.0% | 70.0% |
| 3626225 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 43.0 | 2.80e-01 | 96.9% | 53.9% |
| 5081199 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.51 | 38.0 | 3.07e-01 | 86.2% | 49.3% |
| 3801512 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 39.0 | 3.19e-01 | 90.8% | 45.0% |
| 3207626 | 304.48.1.11 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol | 0.50 | 35.0 | 3.34e-01 | 76.9% | 70.6% |
| 3593635 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 42.0 | 3.49e-01 | 90.8% | 55.5% |
| 5020380 | 210.1.3.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 | 0.50 | 31.0 | 2.24e-01 | 92.3% | 20.0% |