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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00596
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00596
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-160
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.76 | 41.0 | 5.46e-01 | 87.1% | 97.4% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.69 | 53.0 | 5.22e-01 | 79.9% | 84.0% |
| 2yfoA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.68 | 48.0 | 3.67e-01 | 72.7% | 97.4% |
| 2ciqA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.67 | 46.0 | 3.61e-01 | 71.2% | 95.8% |
| 3mwxA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.66 | 47.0 | 3.54e-01 | 72.7% | 99.4% |
| 3dcdA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.66 | 47.0 | 3.59e-01 | 72.7% | 96.7% |
| 1snzB00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.65 | 46.0 | 3.45e-01 | 72.7% | 99.4% |
| 2d73A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.64 | 45.0 | 3.51e-01 | 70.5% | 94.7% |
| 1ulvA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.63 | 46.0 | 3.68e-01 | 76.3% | 80.9% |
| 1vprA03 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.62 | 43.0 | 4.18e-01 | 71.9% | 99.4% |
| 1x1iA02 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.61 | 43.0 | 3.40e-01 | 70.5% | 95.6% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.61 | 40.0 | 4.64e-01 | 78.4% | 94.9% |
| 4c00A04 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.60 | 38.0 | 2.82e-01 | 98.6% | 27.7% |
| 1lf6A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.60 | 45.0 | 3.57e-01 | 76.3% | 80.6% |
| 2i99A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.60 | 42.0 | 4.08e-01 | 70.5% | 82.7% |
| 3actA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.58 | 48.0 | 3.74e-01 | 86.3% | 94.3% |
| 1v7wA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.56 | 46.0 | 3.56e-01 | 86.3% | 87.7% |
| 3p0lD00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 49.0 | 4.44e-01 | 95.0% | 94.1% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.55 | 43.0 | 4.06e-01 | 100.0% | 69.3% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 43.0 | 4.44e-01 | 84.2% | 92.6% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.54 | 40.0 | 3.92e-01 | 76.3% | 94.7% |
| 7wffb01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 44.0 | 3.36e-01 | 85.6% | 98.7% |
| 6secA03 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 42.0 | 3.38e-01 | 83.5% | 89.8% |
| 6ka3A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 42.0 | 4.20e-01 | 86.3% | 98.6% |
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.53 | 35.0 | 4.02e-01 | 84.9% | 90.4% |
| 6jhpA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.52 | 47.0 | 3.68e-01 | 99.3% | 93.6% |
| 4xmeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 42.0 | 3.87e-01 | 87.8% | 89.1% |
| 3mi6A01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.51 | 46.0 | 3.59e-01 | 99.3% | 94.2% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 41.0 | 4.11e-01 | 88.5% | 95.9% |
| 2bkkA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 32.0 | 3.83e-01 | 72.7% | 97.8% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.51 | 31.0 | 2.96e-01 | 93.5% | 50.6% |
| 3f8xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 40.0 | 4.11e-01 | 83.5% | 96.2% |
| 2xn1A01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.50 | 45.0 | 3.51e-01 | 99.3% | 95.5% |
| 2pcsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 43.0 | 4.24e-01 | 94.2% | 98.7% |
| 6fopA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.50 | 41.0 | 3.51e-01 | 87.8% | 81.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4524129 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.72 | 45.0 | 5.44e-01 | 79.1% | 92.6% |
| 4428765 | 12.3.1.15 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › AmyA-gluTrfs_C | 0.69 | 48.0 | 3.68e-01 | 70.5% | 98.3% |
| 5057652 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.67 | 47.0 | 3.81e-01 | 71.2% | 96.8% |
| 4012990 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.67 | 51.0 | 4.69e-01 | 79.9% | 85.5% |
| 3204975 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.67 | 51.0 | 4.83e-01 | 79.9% | 86.1% |
| 5013018 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.65 | 45.0 | 4.65e-01 | 75.5% | 75.4% |
| 3512529 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.65 | 49.0 | 4.74e-01 | 80.6% | 95.6% |
| 3924339 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.63 | 44.0 | 2.72e-01 | 70.5% | 37.3% |
| 4883232 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.63 | 44.0 | 3.43e-01 | 71.9% | 91.2% |
| 3736649 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.62 | 49.0 | 4.35e-01 | 89.2% | 58.8% |
| 3225336 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.61 | 43.0 | 4.24e-01 | 71.2% | 91.0% |
| 2320506 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.61 | 43.0 | 4.32e-01 | 73.4% | 98.6% |
| 5053737 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.61 | 51.0 | 3.89e-01 | 87.8% | 92.8% |
| 4021982 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.61 | 50.0 | 3.80e-01 | 86.3% | 93.9% |
| 2022 | 12.3.1.16 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glucodextran_N | 0.60 | 45.0 | 3.55e-01 | 76.3% | 79.4% |
| 3791103 | 12.3.1.42 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 | 0.59 | 50.0 | 3.62e-01 | 88.5% | 53.6% |
| 3733630 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.57 | 46.0 | 3.75e-01 | 84.9% | 91.4% |
| 3254045 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.57 | 47.0 | 3.68e-01 | 86.3% | 75.4% |
| 3293131 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.57 | 44.0 | 3.66e-01 | 81.3% | 60.4% |
| 3825682 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.56 | 35.0 | 4.02e-01 | 92.8% | 85.9% |
| 4596178 | 12.3.1.12 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_transf_36 | 0.56 | 46.0 | 3.55e-01 | 86.3% | 86.9% |
| 4028624 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.56 | 42.0 | 3.25e-01 | 76.3% | 79.7% |
| 3599013 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 39.0 | 3.75e-01 | 71.9% | 63.1% |
| 3846916 | 331.9.1.8 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 | 0.55 | 41.0 | 4.42e-01 | 94.2% | 93.9% |
| 3808409 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.55 | 49.0 | 4.12e-01 | 100.0% | 89.4% |
| 4010689 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.55 | 35.0 | 4.13e-01 | 89.2% | 91.0% |
| 3559952 | 71.2.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N | 0.55 | 45.0 | 3.80e-01 | 89.2% | 97.1% |
| 3701925 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.54 | 38.0 | 4.06e-01 | 88.5% | 82.5% |
| 1066273 | 331.3.1.12 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like | 0.54 | 43.0 | 4.44e-01 | 84.2% | 92.6% |
| 3695698 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.54 | 38.0 | 3.82e-01 | 71.2% | 74.3% |
| 3438388 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.54 | 46.0 | 4.72e-01 | 97.8% | 93.3% |
| 4156637 | 12.3.1.24 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas | 0.53 | 43.0 | 3.51e-01 | 87.1% | 90.9% |
| 5009503 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.53 | 44.0 | 4.47e-01 | 89.2% | 97.1% |
| 4662134 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.53 | 35.0 | 3.88e-01 | 79.9% | 81.7% |
| 5009761 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.52 | 44.0 | 4.39e-01 | 89.9% | 97.2% |
| 4806694 | 1033.1.1.3 ↗ | beta duplicates or obligate multimers › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › TcdA_TcdB_pore, PF30720 | 0.51 | 41.0 | 3.56e-01 | 100.0% | 54.8% |
| 6333 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.51 | 41.0 | 4.12e-01 | 88.5% | 96.6% |
| 3500010 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 38.0 | 3.21e-01 | 78.4% | 52.8% |
| 5035188 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.51 | 37.0 | 3.98e-01 | 76.3% | 93.2% |
| 3808998 | 331.3.1.28 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 | 0.51 | 40.0 | 3.56e-01 | 85.6% | 75.5% |
| 3980013 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.50 | 37.0 | 2.69e-01 | 77.0% | 31.1% |
| 3186198 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.50 | 36.0 | 3.79e-01 | 96.4% | 81.6% |