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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00623
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00623
Identity
- Kingdom:
- phage
Quality
88.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-99
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.71 | 42.0 | 4.37e-01 | 74.0% | 62.6% |
| 6vvoE02 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.71 | 51.0 | 5.08e-01 | 93.8% | 72.7% |
| 3u61D03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.70 | 47.0 | 4.88e-01 | 93.8% | 72.5% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.66 | 56.0 | 5.11e-01 | 93.8% | 69.6% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 45.0 | 3.94e-01 | 74.0% | 82.3% |
| 4mo1A00 | 1.10.274.110 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.61 | 42.0 | 3.71e-01 | 71.9% | 74.5% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.60 | 41.0 | 4.76e-01 | 75.0% | 98.5% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 38.0 | 4.08e-01 | 78.1% | 73.8% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 38.0 | 4.06e-01 | 76.0% | 74.7% |
| 1nxhA00 | 1.10.3070.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein MTH393 › EhaM-like | 0.58 | 47.0 | 4.31e-01 | 86.5% | 77.4% |
| 3qwlA02 | 1.10.8.680 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ypt/Rab-GAP domain of gyp1p, domain 2 | 0.58 | 43.0 | 4.66e-01 | 85.4% | 100.0% |
| 3fkeA01 | 1.10.8.950 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain | 0.57 | 37.0 | 4.22e-01 | 77.1% | 90.1% |
| 3frqB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 40.0 | 3.30e-01 | 74.0% | 91.8% |
| 3jr7A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.56 | 44.0 | 4.12e-01 | 83.3% | 75.4% |
| 2rfbA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.56 | 46.0 | 3.19e-01 | 90.6% | 56.8% |
| 1y1uA03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 46.0 | 4.33e-01 | 93.8% | 95.1% |
| 1n40A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 43.0 | 2.90e-01 | 84.4% | 62.9% |
| 2v57A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 43.0 | 3.47e-01 | 81.2% | 63.2% |
| 3j7aY00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.21e-01 | 74.0% | 47.4% |
| 3c3dA02 | 1.10.8.240 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain | 0.52 | 38.0 | 3.96e-01 | 77.1% | 100.0% |
| 6jlzA01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.50 | 39.0 | 3.77e-01 | 96.9% | 74.1% |
| 3aljA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 43.0 | 3.35e-01 | 95.8% | 94.5% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.50 | 32.0 | 2.96e-01 | 77.1% | 48.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4988048 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.74 | 43.0 | 5.24e-01 | 90.6% | 91.7% |
| 119326 | 3073.1.1.1 ↗ | alpha arrays › ORF12 from Lactococcus lactis phage p2 › ORF12 from Lactococcus lactis phage p2 › ORF12 from Lactococcus lactis phage p2 › Phage_p2_ORF12 | 0.71 | 42.0 | 4.37e-01 | 74.0% | 62.6% |
| 3455585 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.66 | 46.0 | 4.54e-01 | 70.8% | 69.0% |
| 4995693 | 4230.1.1.0 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain | 0.60 | 39.0 | 4.33e-01 | 70.8% | 85.3% |
| 3368923 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.60 | 44.0 | 3.53e-01 | 76.0% | 85.0% |
| 3585359 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.60 | 51.0 | 3.67e-01 | 96.9% | 81.7% |
| 4472484 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.58 | 46.0 | 4.25e-01 | 85.4% | 82.4% |
| 3191012 | 103.4.1.2 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M | 0.56 | 42.0 | 4.17e-01 | 81.2% | 85.7% |
| 3885572 | 108.1.1.19 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_3 | 0.56 | 46.0 | 4.59e-01 | 92.7% | 91.0% |
| 3106550 | 149.1.1.0 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 | 0.55 | 43.0 | 2.92e-01 | 85.4% | 62.7% |
| 3281177 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.54 | 44.0 | 3.66e-01 | 91.7% | 94.1% |
| 3939708 | 601.24.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | 0.54 | 46.0 | 4.45e-01 | 93.8% | 90.0% |
| 3419814 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.53 | 43.0 | 3.21e-01 | 92.7% | 45.5% |
| 3227689 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.52 | 37.0 | 2.63e-01 | 72.9% | 64.6% |
| 3903804 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.52 | 41.0 | 3.41e-01 | 87.5% | 68.9% |
| 3801591 | 524.1.1.0 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p | 0.51 | 42.0 | 4.16e-01 | 90.6% | 83.8% |