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SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00652
Bact-VirSR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00652
Identity
- Kingdom:
- phage
Quality
84.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-71
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.67 | 44.0 | 3.81e-01 | 92.2% | 43.0% |
| 2o3oA01 | 2.40.128.690 | Mainly Beta › Beta Barrel › Lipocalin › YycH protein, domain 3-like | 0.63 | 43.0 | 3.53e-01 | 84.4% | 37.2% |
| 1av4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.63 | 53.0 | 3.27e-01 | 98.4% | 67.0% |
| 2l4vA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 44.0 | 3.42e-01 | 92.2% | 35.6% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 39.0 | 3.86e-01 | 95.3% | 62.3% |
| 3lidA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 34.0 | 2.71e-01 | 78.1% | 26.1% |
| 3n4fA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 51.0 | 4.10e-01 | 98.4% | 74.8% |
| 1ohgA01 | 3.30.2400.10 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 | 0.58 | 43.0 | 3.38e-01 | 81.2% | 91.8% |
| 3mxtA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.58 | 36.0 | 3.16e-01 | 84.4% | 41.0% |
| 4q8gA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 50.0 | 3.08e-01 | 93.8% | 74.7% |
| 2k4nA00 | 3.30.720.70 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.58 | 45.0 | 3.83e-01 | 95.3% | 50.5% |
| 2chrA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 49.0 | 3.95e-01 | 100.0% | 89.8% |
| 8b4hA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 43.0 | 3.33e-01 | 100.0% | 34.6% |
| 8c5yA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 49.0 | 3.66e-01 | 100.0% | 65.3% |
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 2.98e-01 | 73.4% | 47.2% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 43.0 | 4.21e-01 | 100.0% | 77.0% |
| 2mamA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 48.0 | 3.94e-01 | 96.9% | 74.6% |
| 8fkmA01 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 49.0 | 3.65e-01 | 100.0% | 55.5% |
| 1rvkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 47.0 | 3.97e-01 | 100.0% | 100.0% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.55 | 39.0 | 3.00e-01 | 89.1% | 29.5% |
| 3qldA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 46.0 | 3.55e-01 | 96.9% | 80.9% |
| 2lfiA00 | 2.60.40.4300 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 42.0 | 3.56e-01 | 89.1% | 71.3% |
| 3ialA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 42.0 | 2.86e-01 | 87.5% | 66.9% |
| 1mpgA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.54 | 36.0 | 2.99e-01 | 96.9% | 40.2% |
| 5dstA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.54 | 46.0 | 3.39e-01 | 98.4% | 60.5% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.53 | 32.0 | 3.30e-01 | 81.2% | 61.4% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 43.0 | 3.19e-01 | 93.8% | 34.1% |
| 1hxmB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.30e-01 | 85.9% | 70.4% |
| 6h9xA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 44.0 | 2.87e-01 | 100.0% | 85.9% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 42.0 | 3.59e-01 | 96.9% | 96.6% |
| 2qkdA03 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.51 | 37.0 | 3.96e-01 | 93.8% | 96.1% |
| 2lpuA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 46.0 | 3.47e-01 | 100.0% | 58.1% |
| 1ddvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 39.0 | 3.33e-01 | 90.6% | 51.9% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3696153 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.75 | 51.0 | 3.23e-01 | 84.4% | 14.3% |
| 3588488 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.72 | 54.0 | 4.72e-01 | 84.4% | 53.7% |
| 3623547 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.70 | 47.0 | 4.61e-01 | 84.4% | 64.3% |
| 3551009 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.66 | 46.0 | 3.15e-01 | 90.6% | 21.4% |
| 3840243 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.65 | 53.0 | 4.69e-01 | 95.3% | 64.0% |
| 3874857 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.64 | 52.0 | 4.58e-01 | 95.3% | 61.0% |
| 3780755 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.63 | 44.0 | 3.02e-01 | 90.6% | 20.9% |
| 3998929 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 46.0 | 3.76e-01 | 85.9% | 40.0% |
| 3264681 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.61 | 49.0 | 3.35e-01 | 87.5% | 33.3% |
| 3660107 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.60 | 52.0 | 4.02e-01 | 95.3% | 85.7% |
| 3460645 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.60 | 51.0 | 3.19e-01 | 96.9% | 31.3% |
| 3669435 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 47.0 | 4.37e-01 | 84.4% | 78.8% |
| 3680043 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 48.0 | 3.86e-01 | 85.9% | 55.8% |
| 3193145 | 2003.1.2.29 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 | 0.59 | 45.0 | 2.72e-01 | 84.4% | 12.7% |
| 3593683 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.59 | 38.0 | 2.52e-01 | 84.4% | 14.2% |
| 184717 | 4272.2.1.1 ↗ | a+b two layers › Nqo5-like › Protein PF0246 › Protein PF0246 › DUF5748 | 0.58 | 45.0 | 3.83e-01 | 95.3% | 50.5% |
| 3391411 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 35.0 | 4.05e-01 | 85.9% | 95.0% |
| 5004559 | 1.1.13.75 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube | 0.57 | 45.0 | 3.51e-01 | 84.4% | 86.7% |
| 4467756 | 283.1.1.3 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase | 0.57 | 37.0 | 3.19e-01 | 84.4% | 41.7% |
| 3357873 | 2.1.1.315 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3, CDC24_OB2, CDC24_OB1 | 0.57 | 50.0 | 2.98e-01 | 100.0% | 20.4% |
| 3738561 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 48.0 | 4.13e-01 | 95.3% | 94.3% |
| 4018119 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 40.0 | 2.50e-01 | 82.8% | 12.2% |
| 4879658 | 2005.1.1.21 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Pantoate_ligase | 0.57 | 40.0 | 3.41e-01 | 84.4% | 44.1% |
| 4661462 | 283.1.1.3 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase | 0.56 | 37.0 | 3.08e-01 | 84.4% | 39.1% |
| 4932742 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 50.0 | 4.08e-01 | 100.0% | 56.7% |
| 3650703 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 50.0 | 3.70e-01 | 100.0% | 72.7% |
| 3450553 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.56 | 49.0 | 3.74e-01 | 98.4% | 73.8% |
| 4969784 | 3425.2.1.0 ↗ | a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain | 0.56 | 47.0 | 3.20e-01 | 100.0% | 80.4% |
| 4994610 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.55 | 47.0 | 3.97e-01 | 100.0% | 72.2% |
| 3536595 | 2004.1.1.413 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tudor_2 | 0.55 | 46.0 | 3.77e-01 | 98.4% | 75.4% |
| 3990002 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.55 | 41.0 | 3.70e-01 | 84.4% | 58.8% |
| 215294 | 3114.1.1.3 ↗ | beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › Muc_B2 | 0.54 | 42.0 | 3.56e-01 | 89.1% | 71.3% |
| 3932155 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 42.0 | 2.82e-01 | 85.9% | 20.0% |
| 3972580 | 331.1.1.3 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N | 0.54 | 36.0 | 3.41e-01 | 96.9% | 56.2% |
| 4514734 | 1.1.13.42 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Tail_tube | 0.54 | 42.0 | 3.54e-01 | 84.4% | 83.6% |
| 3517035 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 46.0 | 4.13e-01 | 100.0% | 81.1% |
| 5055109 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.54 | 46.0 | 4.17e-01 | 100.0% | 75.6% |
| 5038450 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.53 | 42.0 | 2.87e-01 | 90.6% | 31.9% |
| 3396837 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.53 | 36.0 | 3.53e-01 | 81.2% | 64.3% |
| 5052132 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.53 | 44.0 | 3.85e-01 | 100.0% | 68.2% |
| 4049368 | 243.1.1.76 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 | 0.53 | 41.0 | 3.45e-01 | 87.5% | 47.8% |
| 3174353 | 5.1.4.573 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30151 | 0.52 | 42.0 | 2.67e-01 | 95.3% | 35.3% |
| 4470293 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.52 | 45.0 | 4.01e-01 | 100.0% | 76.8% |
| 5071966 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.52 | 43.0 | 3.71e-01 | 100.0% | 67.8% |
| 5062233 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 41.0 | 3.48e-01 | 85.9% | 68.6% |
| 180695 | 3114.1.1.3 ↗ | beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › Muc_B2 | 0.52 | 40.0 | 3.53e-01 | 87.5% | 84.0% |
| 4644245 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.52 | 39.0 | 2.77e-01 | 89.1% | 34.1% |
| 3531702 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 42.0 | 3.40e-01 | 96.9% | 87.1% |
| 3575305 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.52 | 39.0 | 2.43e-01 | 82.8% | 14.6% |
| 3956484 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.51 | 44.0 | 3.65e-01 | 100.0% | 75.8% |
| 3266842 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 43.0 | 3.49e-01 | 95.3% | 89.6% |
| 5052982 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.51 | 42.0 | 3.10e-01 | 90.6% | 76.5% |
| 3702616 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 37.0 | 3.06e-01 | 79.7% | 46.4% |
| 4945299 | 512.1.1.5 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_3rd | 0.51 | 42.0 | 3.52e-01 | 98.4% | 62.5% |
| 3964955 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.51 | 37.0 | 2.93e-01 | 82.8% | 75.0% |
| 4015446 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 36.0 | 2.88e-01 | 84.4% | 32.9% |
| 4970894 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.50 | 41.0 | 2.96e-01 | 92.2% | 86.8% |