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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00004
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00004
Identity
- Kingdom:
- phage
Quality
79.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-65
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lgpA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.65 | 49.0 | 4.07e-01 | 81.2% | 57.5% |
| 1p49A03 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.62 | 42.0 | 3.62e-01 | 71.9% | 87.0% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.60 | 47.0 | 2.92e-01 | 82.8% | 28.4% |
| 2f2hA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 44.0 | 3.70e-01 | 78.1% | 57.8% |
| 3qmfA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.58 | 48.0 | 3.73e-01 | 89.1% | 85.1% |
| 3i9v700 | 3.30.920.80 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 | 0.58 | 47.0 | 3.77e-01 | 89.1% | 63.0% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.56 | 42.0 | 2.90e-01 | 82.8% | 57.9% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.55 | 43.0 | 3.02e-01 | 87.5% | 83.2% |
| 1zxuA00 | 2.40.160.200 | Mainly Beta › Beta Barrel › Porin › LURP1-related | 0.53 | 41.0 | 3.15e-01 | 85.9% | 39.5% |
| 1x99A00 | 2.60.270.20 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin | 0.52 | 41.0 | 3.23e-01 | 89.1% | 46.2% |
| 1pjxA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 38.0 | 2.60e-01 | 85.9% | 50.3% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3904700 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.64 | 45.0 | 3.71e-01 | 73.4% | 49.1% |
| 3910175 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 44.0 | 3.72e-01 | 75.0% | 51.4% |
| 3995842 | 10.1.1.4 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin | 0.60 | 42.0 | 3.03e-01 | 75.0% | 26.8% |
| 3836037 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.59 | 40.0 | 3.08e-01 | 70.3% | 80.0% |
| 3587406 | 331.1.1.2 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans | 0.58 | 39.0 | 2.86e-01 | 70.3% | 56.0% |
| 1548152 | 331.1.1.2 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans | 0.57 | 39.0 | 2.83e-01 | 70.3% | 55.4% |
| 5047489 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.57 | 42.0 | 2.98e-01 | 79.7% | 42.9% |
| 2774803 | 11.1.5.48 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Big_8 | 0.57 | 38.0 | 2.92e-01 | 70.3% | 63.2% |
| 3587407 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.56 | 41.0 | 3.66e-01 | 81.2% | 67.0% |
| 3850092 | 4099.1.1.21 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › RM3_Med14 | 0.55 | 44.0 | 3.96e-01 | 87.5% | 67.8% |
| 3263745 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.55 | 43.0 | 3.23e-01 | 85.9% | 51.8% |
| 3917408 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 3.85e-01 | 92.2% | 81.0% |
| 4499276 | 79.1.1.18 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 | 0.54 | 40.0 | 3.73e-01 | 79.7% | 81.2% |
| 3596980 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.53 | 42.0 | 3.02e-01 | 89.1% | 53.7% |
| 3411216 | 79.1.1.18 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 | 0.53 | 37.0 | 3.28e-01 | 75.0% | 64.0% |
| 3110784 | 4056.1.1.4 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con | 0.51 | 39.0 | 3.27e-01 | 87.5% | 70.8% |
| 3703176 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.50 | 29.0 | 3.28e-01 | 89.1% | 79.5% |
| 3653236 | 3347.1.1.0 ↗ | beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 | 0.50 | 37.0 | 2.86e-01 | 81.2% | 83.5% |