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SR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00015
Bact-VirSR-VP_0-2_scaffold_141_2072294_prodigal-single.1__X__X__00015
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 109-172
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.69 | 47.0 | 4.45e-01 | 98.4% | 60.0% |
| 1agjA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 46.0 | 3.68e-01 | 96.9% | 35.1% |
| 1v5vA03 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.62 | 43.0 | 4.16e-01 | 98.4% | 62.7% |
| 4b6eB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.61 | 46.0 | 3.25e-01 | 98.4% | 25.7% |
| 2olgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 48.0 | 3.96e-01 | 98.4% | 47.0% |
| 6zlvA01 | 2.40.10.350 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 | 0.60 | 47.0 | 4.41e-01 | 95.3% | 70.1% |
| 3girA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.60 | 41.0 | 3.93e-01 | 96.9% | 60.3% |
| 1a1rA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 46.0 | 4.23e-01 | 100.0% | 64.7% |
| 6ethA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.58 | 51.0 | 4.62e-01 | 98.4% | 89.9% |
| 1x31A02 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.58 | 45.0 | 2.82e-01 | 98.4% | 14.3% |
| 2kz4A00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.58 | 43.0 | 3.63e-01 | 100.0% | 46.4% |
| 1m1gB03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 37.0 | 3.74e-01 | 87.5% | 65.1% |
| 2wv9A01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 39.0 | 2.93e-01 | 96.9% | 26.7% |
| 3cp7B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 42.0 | 3.63e-01 | 100.0% | 49.5% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 42.0 | 3.94e-01 | 98.4% | 64.6% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.55 | 46.0 | 4.40e-01 | 95.3% | 97.3% |
| 1zboA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.54 | 44.0 | 3.83e-01 | 100.0% | 64.6% |
| 5brrE01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 45.0 | 3.54e-01 | 98.4% | 45.5% |
| 1qs1A01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.53 | 44.0 | 3.21e-01 | 100.0% | 60.1% |
| 4kpnA00 | 3.90.245.10 | Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like | 0.53 | 39.0 | 2.53e-01 | 81.2% | 49.7% |
| 1zpsA01 | 3.10.20.810 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase | 0.51 | 41.0 | 3.78e-01 | 98.4% | 77.9% |
| 4m4xA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 43.0 | 3.53e-01 | 100.0% | 85.7% |
| 1s68A01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.51 | 42.0 | 3.62e-01 | 100.0% | 100.0% |
| 3dclA01 | 2.102.30.10 | Mainly Beta › 3-layer Sandwich › tm1086 (SG structure) fold › tm1086 (SG structure) domain | 0.50 | 44.0 | 3.35e-01 | 100.0% | 43.1% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.77 | 66.0 | 6.83e-01 | 98.4% | 98.3% |
| 2443967 | 70.4.1.4 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_decoration | 0.67 | 58.0 | 4.54e-01 | 100.0% | 80.8% |
| 4224505 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.64 | 45.0 | 4.26e-01 | 98.4% | 60.0% |
| 4072484 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.64 | 46.0 | 4.14e-01 | 96.9% | 54.4% |
| 3795488 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.63 | 46.0 | 4.26e-01 | 98.4% | 60.0% |
| 3474805 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.62 | 46.0 | 3.61e-01 | 100.0% | 36.4% |
| 3163913 | 1.1.5.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC | 0.61 | 49.0 | 3.31e-01 | 98.4% | 23.3% |
| 1165612 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.60 | 42.0 | 4.04e-01 | 98.4% | 62.3% |
| 3482891 | 1.1.16.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Trypsin | 0.59 | 48.0 | 4.61e-01 | 100.0% | 77.3% |
| 3236827 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.59 | 49.0 | 4.07e-01 | 100.0% | 50.4% |
| 4882197 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.59 | 40.0 | 3.28e-01 | 87.5% | 38.1% |
| 4439987 | 325.1.7.8 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RnfC_N | 0.58 | 52.0 | 4.55e-01 | 100.0% | 80.0% |
| 5012061 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.56 | 49.0 | 4.83e-01 | 100.0% | 100.0% |
| 3954857 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.55 | 48.0 | 4.17e-01 | 98.4% | 70.4% |
| 4023122 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.55 | 48.0 | 3.22e-01 | 100.0% | 30.0% |
| 3497735 | 3613.1.1.2 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › NOL9_C | 0.53 | 43.0 | 3.51e-01 | 98.4% | 78.6% |
| 4956150 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 31.0 | 3.33e-01 | 82.8% | 67.3% |
| 5016346 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.51 | 42.0 | 3.58e-01 | 100.0% | 60.8% |
| 4053143 | 1.1.5.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S7 | 0.51 | 45.0 | 3.68e-01 | 100.0% | 54.2% |
D2
medium
residues 1-106
Domain cluster:
representative
CATH (2)
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.74 | 42.0 | 5.39e-01 | 76.4% | 100.0% |
| 5022524 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.72 | 39.0 | 4.77e-01 | 77.4% | 81.4% |
| 3766868 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.52 | 30.0 | 3.19e-01 | 73.6% | 65.6% |